Browse Element(s) Details


OsAffx.12261.1.S1_at

Description tigr:9630.m02766
TID=OsAffx.12261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2900011/11Germin-like protein subfamily 1 member 11 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12261.1.S1_at--529--6271Chr02:17159840..17160023 (25 bp)
GATGTCGCAAGTTCTAGTCAATGGA
LOC_Os02g29000
OsAffx.12261.1.S1_at--433--6531Chr02:17159817..17159841 (25 bp)
GATTTGCATGCAAGGACCCAGCGGC
LOC_Os02g29000
OsAffx.12261.1.S1_at--309--7371Chr02:17159719..17159743 (25 bp)
GTGACAGGAGTCAACGTCGCCCAGA
LOC_Os02g29000
OsAffx.12261.1.S1_at--1132--1271Chr02:17159697..17159721 (25 bp)
AGATCTCTGGGCTCAACACCTTGGG
LOC_Os02g29000
OsAffx.12261.1.S1_at--953--5691Chr02:17159653..17159677 (25 bp)
GACTATGCGCCCTATGGTCTTAACC
LOC_Os02g29000
OsAffx.12261.1.S1_at--848--9131Chr02:17159609..17159633 (25 bp)
TGCGACCGAGATCCTGACTATACTG
LOC_Os02g29000
OsAffx.12261.1.S1_at--1135--5691Chr02:17159594..17159618 (25 bp)
GACTATACTGGAGGGCTCACTCTAC
LOC_Os02g29000
OsAffx.12261.1.S1_at--860--7531Chr02:17159511..17159535 (25 bp)
GGGACGTATTCGTGTTTCCTCAGGG
LOC_Os02g29000
OsAffx.12261.1.S1_at--76--1451Chr02:17159421..17159445 (25 bp)
AGAACCCTGGAGTCATCACCATAGC
LOC_Os02g29000
OsAffx.12261.1.S1_at--504--6871Chr02:17159387..17159411 (25 bp)
GTTTGGATCGAAGCCGTTCATATCA
LOC_Os02g29000
OsAffx.12261.1.S1_at--838--3631Chr02:17159353..17159377 (25 bp)
CTTGCCAAGGCCTTTCAGGTGGAGA
LOC_Os02g29000
Target Sequence 
GATGTCGCAAGTTCTAGTCAATGGATTTGCATGCAAGGACCCAGCGGCCATCACCGTGGAAGACTTCTTCTTCTCCGGCC
TTCACATGGCTGGAAACACCAGCAACAGGCAGGGATCGGCCGTGACAGGAGTCAACGTCGCCCAGATCTCTGGGCTCAAC
ACCTTGGGCATCTCTTTGGCCCGCGTCGACTATGCGCCCTATGGTCTTAACCCTCCGCACATTCACCCACGTGCGACCGA
GATCCTGACTATACTGGAGGGCTCACTCTACGTCGGCTTCGTTACCTCCAACCCCGAGAACAAGCTGTTCACCAAGGTTC
TTAACAAGGGGGACGTATTCGTGTTTCCTCAGGGGTTGATCCACTTTCAGTTCAACTATGGTACAAAAGATGTTATAGCC
CTTGCGGCTCTAAGTAGCCAGAACCCTGGAGTCATCACCATAGCAAATGCGGTGTTTGGATCGAAGCCGTTCATATCAGA
TGATATCCTTGCCAAGGCCTTTCAGGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis