Browse Element(s) Details


Os.8010.1.S1_at

Description gb:AK073233.1
DB_XREF= gi:32983256
TID=Os.8010.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023H01, full insert sequence.
FL= gb:AK073233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2898010/1170 kDa peptidylprolyl isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28930NANA2+17126667..17127107hypothetical protein
LOC_Os02g28940OsAffx.20329.1.S1_at2/112+17127794..17128934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28950NANA2+17129166..17131056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28960NANA2+17131543..17133346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8010.1.S1_at--544--5311Chr02:17151060..17151081 (22 bp)
GAAGGAGGCACAACTCAGGCGCCAA
LOC_Os02g28980
Os.8010.1.S1_at--108--8891Chr02:17150942..17150966 (25 bp)
TGAGGCTGCTCATTCCGGTGGTGCT
LOC_Os02g28980
Os.8010.1.S1_at--193--7191Chr02:17150907..17150931 (25 bp)
GTCTGTGTGGCTTTCTACATGCGCA
LOC_Os02g28980
Os.8010.1.S1_at--283--4691Chr02:17150882..17150906 (25 bp)
GCGGACCTCCTGAAGTAGACTGCAT
LOC_Os02g28980
Os.8010.1.S1_at--1132--10211Chr02:17150838..17150862 (25 bp)
TATTGTCGTCTACTTTACATCCGGC
LOC_Os02g28980
Os.8010.1.S1_at--7--9891Chr02:17150823..17150847 (25 bp)
TACATCCGGCTGTAGAGGTCCGTCT
LOC_Os02g28980
Os.8010.1.S1_at--486--3891Chr02:17150793..17150817 (25 bp)
CTGTGCTTCACAATCGGAGTCGACT
LOC_Os02g28980
Os.8010.1.S1_at--38--4071Chr02:17150773..17150797 (25 bp)
CGACTACTACTGTTCACGGTAAGTT
LOC_Os02g28980
Os.8010.1.S1_at--74--9791Chr02:17150754..17150778 (25 bp)
TAAGTTATTTCCGTGGCTGCTGTTG
LOC_Os02g28980
Os.8010.1.S1_at--174--5091Chr02:17150688..17150712 (25 bp)
GCACCTGTGAGCTAGACACGTTCGA
LOC_Os02g28980
Os.8010.1.S1_at--401--1571NONE
AGCTACTGAAAGTTCGCTTCTCGTC
NONE
Target Sequence 
GAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAG
GAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGGCGGTCTGTG
TGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTAC
ATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGTAAGTTATTTCCGT
GGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGTG
ATTGAAACATACAAAGGAAAAAATGATACTGAAAGTTCAACTATTCTCGTGTATGATACTAGAAGCTACTGAAAGTTCGC
TTCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis