Browse Element(s) Details


OsAffx.24489.1.S1_at

Description tigr:9630.m02776
TID=OsAffx.24489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2910011/11Heat shock protein STI, putative
LOC_Os02g290301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29050NANA2+17203880..17205976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29060NANA2+17207503..17208818retrotransposon protein, putative, unclassified
LOC_Os02g29070OsAffx.12264.1.S1_at11/112+17211664..17212593Protein kinase domain containing protein
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24489.1.S1_at--647--4551Chr02:17225691..17225715 (25 bp)
GCGCGGAAAGATGTTGAGACCCTAT
LOC_Os02g29100
OsAffx.24489.1.S1_at--685--9691Chr02:17225660..17225684 (25 bp)
TCACTTCTCGTATTCCGTGTGTGCA
LOC_Os02g29100
OsAffx.24489.1.S1_at--708--7471Chr02:17225644..17225668 (25 bp)
GTGTGTGCACGATTGGACTGTTGAT
LOC_Os02g29100
OsAffx.24489.1.S1_at--45--2791Chr02:17223892..17223916 (25 bp)
AAGAGTTTTGCGAAGCTATGCTTGA
LOC_Os02g29100
OsAffx.24489.1.S1_at--141--3132Chr02:17223859..17223883 (25 bp)
AATTTCAAGGCCGTGAAGCAGTCAA
LOC_Os02g29100
OsAffx.24489.1.S1_at--221--351Chr02:17223832..17223856 (25 bp)
ATAAAGATTATCGTGGTGCCATGCA
LOC_Os02g29100
OsAffx.24489.1.S1_at--409--7791Chr02:17223818..17223842 (25 bp)
GGTGCCATGCACATTTATACCAAGG
LOC_Os02g29100
OsAffx.24489.1.S1_at--224--10191Chr02:17223572..17223827 (25 bp)
TATACCAAGGCTATTGCTCTCAATA
LOC_Os02g29100
OsAffx.24489.1.S1_at--868--1291Chr02:17223543..17223567 (25 bp)
AGATGCATCTTTGTTCTCAAATAGG
LOC_Os02g29100
OsAffx.24489.1.S1_at--1070--6291Chr02:17223456..17223480 (25 bp)
GATGATGCAACCAAACTGGCCAGAA
LOC_Os02g29100
OsAffx.24489.1.S1_at--521--4991Chr02:17223301..17223325 (25 bp)
GCATGCAGCTCATTTCTTGATGGTC
LOC_Os02g29100
Target Sequence 
GCGCGGAAAGATGTTGAGACCCTATTTCCTGTCACTTCTCGTATTCCGTGTGTGCACGATTGGACTGTTGATGGAATCAT
TAATTATGCAAAGTCACTGCCTGATGTGAAGGATGAAGAGTTTTGCGAAGCTATGCTTGATATGGGAAAATTTCAAGGCC
GTGAAGCAGTCAAGAATAAAGATTATCGTGGTGCCATGCACATTTATACCAAGGCTATTGCTCTCAATACTAGAGATGCA
TCTTTGTTCTCAAATAGGAGCCTTTGTTGGCTGAAATTGGGTGAGGGGGAGAAGGCTTTGATAGATGCTGAAGCTTGCAG
GATGATGCAACCAAACTGGCCAGAAGCCTGCTACCGTCAAGGAGCTGCTCTAATGTTACTGAAGGATTACAAAAATGCAT
GCAGCTCATTTCTTGATGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis