Browse Element(s) Details


Os.57050.1.S1_at

Description gb:AK110813.1
DB_XREF= gi:32996022
TID=Os.57050.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F07, full insert sequence.
FL= gb:AK110813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2913011/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57050.1.S1_at--58--2351Chr02:17241540..17241564 (25 bp)
AAAGACTATCTTACTGCCGCAAAAC
LOC_Os02g29130
Os.57050.1.S1_at--547--6391Chr02:17240004..17240028 (25 bp)
GATCGAGCACGACCCTGAAGATATG
LOC_Os02g29130
Os.57050.1.S1_at--223--6511Chr02:17239985..17240009 (25 bp)
GATATGACCTTGTACTCTAACACGA
LOC_Os02g29130
Os.57050.1.S1_at--489--3731Chr02:17239969..17239993 (25 bp)
CTAACACGAGCGTTTGCTGGCTTAA
LOC_Os02g29130
Os.57050.1.S1_at--250--7951Chr02:17239900..17239924 (25 bp)
GGATATTGCGCCCTGATTGGCCCAA
LOC_Os02g29130
Os.57050.1.S1_at--98--2891Chr02:17239861..17239885 (25 bp)
AAGGGACCGCTCACATGTTCATGAA
LOC_Os02g29130
Os.57050.1.S1_at--353--431Chr02:17239400..17239424 (25 bp)
ATCATTGAAGGCGTCTCGTGCTGCT
LOC_Os02g29130
Os.57050.1.S1_at--571--7311Chr02:17239383..17239407 (25 bp)
GTGCTGCTTGAATTGCCTATCTGTT
LOC_Os02g29130
Os.57050.1.S1_at--988--10811Chr02:17239324..17239348 (25 bp)
TTGTGTTTGCAAAGCCGTCAGCCAT
LOC_Os02g29130
Os.57050.1.S1_at--578--4431Chr02:17239304..17239328 (25 bp)
GCCATGCCACTAGTTGCTGAAGGTT
LOC_Os02g29130
Os.57050.1.S1_at--794--7891Chr02:17239272..17239296 (25 bp)
GGTTCATGTATTCTGTGACTCCCAT
LOC_Os02g29130
Target Sequence 
AAAGACTATCTTACTGCCGCAAAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACAC
GAGCGTTTGCTGGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTGCAGGATATTGCGCCCTGATT
GGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTTCATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGAT
GGTTTCAAACTGGACCCAGCGAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGC
TGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGTAACACTTGTGTTTGCAAAGCCGTCAGCCAT
GCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATTCTGTGACTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis