Browse Element(s) Details


OsAffx.2785.1.S1_at

Description tigr:9630.m02783
TID=OsAffx.2785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g291606/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29170OsAffx.31801.4.S1_at10/112+17288054..17290035hypothetical protein
LOC_Os02g29180NANA2+17294959..17295477hypothetical protein
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005515molecular_functionprotein binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2785.1.S1_at--691--8071Chr02:17285244..17285268 (25 bp)
GGAGCACGGCTGTCGTGGAAGCTGA
NONE
OsAffx.2785.1.S1_at--828--1611Chr02:17285190..17285214 (25 bp)
AGCTGGTCGTGAATGCCGAGGTCAT
NONE
OsAffx.2785.1.S1_at--143--3911Chr02:17285188..17285212 (25 bp)
CTGGTCGTGAATGCCGAGGTCATCG
NONE
OsAffx.2785.1.S1_at--224--3551NONE
CATCTACGACCAAGCAACTGCTACA
NONE
OsAffx.2785.1.S1_at--691--2731Chr02:17283326..17283349 (24 bp)
AAGCAACTGCTACATCAGTCCCAAT
LOC_Os02g29160
OsAffx.2785.1.S1_at--147--9091Chr02:17283319..17283343 (25 bp)
TGCTACATCAGTCCCAATTCTCAAA
LOC_Os02g29160
OsAffx.2785.1.S1_at--316--2091Chr02:17283315..17283339 (25 bp)
ACATCAGTCCCAATTCTCAAAAGGA
LOC_Os02g29160
OsAffx.2785.1.S1_at--428--9691Chr02:17283299..17283323 (25 bp)
TCAAAAGGACCTTCATCGGGAATGG
LOC_Os02g29160
OsAffx.2785.1.S1_at--159--2291Chr02:17283297..17283320 (24 bp)
AAAGGACCTTCATCGGGAATGGAGT
LOC_Os02g29160
OsAffx.2785.1.S1_at--1132--1731Chr02:17283153..17283315 (25 bp)
ACCTTCATCGGGAATGGAGTTTGCC
LOC_Os02g29160
OsAffx.2785.1.S1_at--867--3531NONE
CATCGGGAATGGAGTTTGCCAATTC
NONE
Target Sequence 
GGAGCACGGCTGTCGTGGAAGCTGAGGCGGCGGAGGTAGAGGAGCGCCGGGCGGAGCTGGTCGTGAATGCCGAGGTCATC
GGTGAGGAAGGCAAAGACCGGGTGGAGGTCGGCGCGGACGCTGGCGGGGTGGTGAGGTCGCTGGACGGAGGGAGGGGCCG
CCCCGCGGAGGCGGTGGAGGCCGTGCGGGAGTGCGGCGCGGGCGCGCTGCACCTCGCCGCCGGCGCGGGGAAGCTGGCGG
TGTGCAGGTACCTGGTCGAGGAGCTTCGGGTGGATGCCAACGCCATCTACGACCAAGCAACTGCTACATCAGTCCCAATT
CTCAAAAGGACCTTCATCGGGAATGGAGTTTGCCAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis