Browse Element(s) Details


OsAffx.2786.1.S1_at

Description tigr:9630.m02786
TID=OsAffx.2786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2919011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29170OsAffx.31801.4.S1_at10/112+17288054..17290035hypothetical protein
LOC_Os02g29180NANA2+17294959..17295477hypothetical protein
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed
LOC_Os02g29200NANA2+17312001..17312441hypothetical protein
LOC_Os02g29210OsAffx.24492.1.S1_at11/112+17321724..17329722ankyrin repeat protein FPV115, putative, expressed
LOC_Os02g29220OsAffx.30136.2.S1_at11/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29220Os.48068.1.S1_x_at3/112+17331725..17336458Transcription termination factor nusG family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2786.1.S1_at--733--1311Chr02:17307488..17307512 (25 bp)
AGATGGTCTGACACCTCTTGATACT
LOC_Os02g29190
OsAffx.2786.1.S1_at--1074--5631Chr02:17307479..17307503 (25 bp)
GACACCTCTTGATACTGCTATGGAT
LOC_Os02g29190
OsAffx.2786.1.S1_at--545--471Chr02:17307056..17307456 (25 bp)
ATCTCCTGATTAAGGTTGGTGCTGT
LOC_Os02g29190
OsAffx.2786.1.S1_at--754--5351Chr02:17307024..17307048 (25 bp)
GAAGATCGCATGTTAACTGCTGAAA
LOC_Os02g29190
OsAffx.2786.1.S1_at--198--2131Chr02:17306999..17307023 (25 bp)
ACAGTGGTTCTACAGAGTGCTTCAA
LOC_Os02g29190
OsAffx.2786.1.S1_at--443--9751Chr02:17303632..17303654 (23 bp)
TAAGGCACTGTACCTTTACCCTGAT
LOC_Os02g29190
OsAffx.2786.1.S1_at--920--6291Chr02:17303610..17303634 (25 bp)
GATGATGCTACCTTGTTCTCAAATA
LOC_Os02g29190
OsAffx.2786.1.S1_at--423--5231Chr02:17303529..17303553 (25 bp)
GAATGTAGGAAGTTGCGGTCTGACT
LOC_Os02g29190
OsAffx.2786.1.S1_at--421--4591Chr02:17303353..17303377 (25 bp)
GCGAAGCACTTTACAATGGATTCAA
LOC_Os02g29190
OsAffx.2786.1.S1_at--414--6331Chr02:17303300..17303324 (25 bp)
GATGCATTTCGGTATCCTTTCTGCC
LOC_Os02g29190
OsAffx.2786.1.S1_at--1025--3671Chr02:17303284..17303308 (25 bp)
CTTTCTGCCTATTTTGGTCGCATTA
LOC_Os02g29190
Target Sequence 
AGATGGTCTGACACCTCTTGATACTGCTATGGATTCTGGTGAATTAAAATGCATAAATCTCCTGATTAAGGTTGGTGCTG
TTGTCAGTGAAGATCGCATGTTAACTGCTGAAAACAGTGGTTCTACAGAGTGCTTCAATTACTTAATGGAAGAGACTGGT
GCCAACTGTAACATTTCTGATAATGGTGAGCCTGTCAATAAAAGGAAAGCAACAGATTTAAAGTCACTGGGTAATAAGGC
TGTCGAGAAAAAGGATTATCTATCTGCAACAGGATTCTACAGTAAGGCACTGTACCTTTACCCTGATGATGCTACCTTGT
TCTCAAATAGGAGCCTTTGCTGGCATCGCATGGGTGATGGAGGCAAGGCTTTGCTGGATGCTCATGAATGTAGGAAGTTG
CGGTCTGACTGGCCAAAGGCCTACTACCGGCTGGGTGCTGCTCTGATGTTACTGAAGGACTATGAGAGTGCTTGCGAAGC
ACTTTACAATGGATTCAAGTTGGATCCAGGGAACTCTGAGATTGAGGATGCATTTCGGTATCCTTTCTGCCTATTTTGGT
CGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis