Browse Element(s) Details


OsAffx.30136.2.S1_at

Description tigr:9630.m02789
TID=OsAffx.30136.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transcription termination factor nusG, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2922011/11Transcription termination factor nusG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed
LOC_Os02g29200NANA2+17312001..17312441hypothetical protein
LOC_Os02g29210OsAffx.24492.1.S1_at11/112+17321724..17329722ankyrin repeat protein FPV115, putative, expressed
LOC_Os02g29220OsAffx.30136.2.S1_at11/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29220Os.48068.1.S1_x_at3/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29230OsAffx.2788.1.S1_at11/112+17348970..17357069hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30136.2.S1_at--757--1151Chr02:17336150..17336174 (25 bp)
AGTCTAAAGACACCCAAACGAGTGA
LOC_Os02g29220
OsAffx.30136.2.S1_at--974--5611Chr02:17336158..17336182 (25 bp)
GACACCCAAACGAGTGACAAGATTG
LOC_Os02g29220
OsAffx.30136.2.S1_at--31--7011Chr02:17336218..17336242 (25 bp)
GTACGGTTCATTGTTAGTCTATTTA
LOC_Os02g29220
OsAffx.30136.2.S1_at--501--10212Chr12:472721..473151 (25 bp)
TATTATGTGCAAATGGATTCTTTAC
NONE
OsAffx.30136.2.S1_at--1026--4871Chr02:17336283..17336307 (25 bp)
GCTTTGGTGGGCTAGGCAATAAGTA
LOC_Os02g29220
OsAffx.30136.2.S1_at--472--10371Chr02:17336333..17336357 (25 bp)
TTTTTTGTCACTAACAGGAGGCTAT
LOC_Os02g29220
OsAffx.30136.2.S1_at--462--2491Chr02:17336345..17336369 (25 bp)
AACAGGAGGCTATCCTTTTCTCTGG
LOC_Os02g29220
OsAffx.30136.2.S1_at--1153--911Chr02:17336351..17336375 (25 bp)
AGGCTATCCTTTTCTCTGGCAGAGC
LOC_Os02g29220
OsAffx.30136.2.S1_at--399--10571Chr02:17336362..17336386 (25 bp)
TTCTCTGGCAGAGCTCTAACTAGTA
LOC_Os02g29220
OsAffx.30136.2.S1_at--569--8251Chr02:17336368..17336392 (25 bp)
GGCAGAGCTCTAACTAGTAACTAGT
LOC_Os02g29220
OsAffx.30136.2.S1_at--602--1151Chr02:17336383..17336407 (25 bp)
AGTAACTAGTGTGCTTTACTATTCA
LOC_Os02g29220
Target Sequence 
AGTCTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATT
GTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATG
GATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTCTCTGGCAGAGCTCTAACTAGTAACT
AGTGTGCTTTACTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30136.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis