Browse Element(s) Details


OsAffx.2788.1.S1_at

Description tigr:9630.m02790
TID=OsAffx.2788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DEMETER protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29210OsAffx.24492.1.S1_at11/112+17321724..17329722ankyrin repeat protein FPV115, putative, expressed
LOC_Os02g29220OsAffx.30136.2.S1_at11/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29220Os.48068.1.S1_x_at3/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29230OsAffx.2788.1.S1_at11/112+17348970..17357069hypothetical protein
LOC_Os02g29240OsAffx.12268.1.S1_at11/112+17372797..17373081hypothetical protein
LOC_Os02g29250OsAffx.2789.1.S1_at11/112+17373665..17374369hypothetical protein
LOC_Os02g29260NANA2+17377800..17382890retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2788.1.S1_at--644--1851Chr02:17356164..17356188 (25 bp)
ACGAACCATCCTGGGCATGTTTATG
LOC_Os02g29230
OsAffx.2788.1.S1_at--421--7351Chr02:17356285..17356309 (25 bp)
GTGAAGATCCCGATGAAATTCCTAT
LOC_Os02g29230
OsAffx.2788.1.S1_at--754--5271Chr02:17356397..17356421 (25 bp)
GAATGCACTGGTTGCCATAAGCCCT
LOC_Os02g29230
OsAffx.2788.1.S1_at--294--7091Chr02:17356458..17356482 (25 bp)
GTCAACCGCTTGAGGACTGAACACC
LOC_Os02g29230
OsAffx.2788.1.S1_at--449--5691Chr02:17356606..17356629 (24 bp)
GACTCACACCCTCTACTGGAAGGAT
LOC_Os02g29230
OsAffx.2788.1.S1_at--543--251Chr02:17356808..17356832 (25 bp)
ATATCTTCTTTCTATATGGACCCCA
LOC_Os02g29230
OsAffx.2788.1.S1_at--271--271Chr02:17356821..17356845 (25 bp)
ATATGGACCCCAGGCAAGCTCATGT
LOC_Os02g29230
OsAffx.2788.1.S1_at--975--4311Chr02:17356850..17356874 (25 bp)
CCATCCAACCTTTACTCTTATACAG
LOC_Os02g29230
OsAffx.2788.1.S1_at--731--9711Chr02:17356917..17356941 (25 bp)
TCAACTGATGCACCCAAGACATTTT
LOC_Os02g29230
OsAffx.2788.1.S1_at--240--8911Chr02:17356970..17356994 (25 bp)
TGAGAGTTCGACATGCTTTAGCTGC
LOC_Os02g29230
OsAffx.2788.1.S1_at--677--7031Chr02:17356999..17357023 (25 bp)
GTACACGGGAAATGCAGTCTCAGAA
LOC_Os02g29230
Target Sequence 
ACGAACCATCCTGGGCATGTTTATGAGGCAAGAGAGGCCGAAATAGAGGATTTTTTCAGTGAAGATCCCGATGAAATTCC
TATTATAAATCTTAATGTCGAGGAGTTTGCACAGAACTTGAAAAGTTATATTCATGCAAACAATATCGAGATCGAAGATG
CTGACATGTCGAATGCACTGGTTGCCATAAGCCCTCAAGCTGCTTCAGTTCCAACTTCCAAGCTCAAGAATGTCAACCGC
TTGAGGACTGAACACCAAGTTTATGAGTTGCCAGACTCACACCCTCTACTGGAAGGATTTGATCAAAGAGAACCAGATGA
TCCCTCCCCATATCTTCTTTCTATATGGACCCCAGGCAAGCTCATGTGCTCCCATCCAACCTTTACTCTTATACAGGTTA
TACTGATGATAAAAATTTCAACAGGTGAAACGGCACAATCAACTGATGCACCCAAGACATTTTGCAACTCCAAGGAAACT
GGTAAACTCTGTGAGAGTTCGACATGCTTTAGCTGCAACAGTACACGGGAAATGCAGTCTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis