Browse Element(s) Details


OsAffx.2789.1.S1_at

Description tigr:9630.m02792
TID=OsAffx.2789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29230OsAffx.2788.1.S1_at11/112+17348970..17357069hypothetical protein
LOC_Os02g29240OsAffx.12268.1.S1_at11/112+17372797..17373081hypothetical protein
LOC_Os02g29250OsAffx.2789.1.S1_at11/112+17373665..17374369hypothetical protein
LOC_Os02g29260NANA2+17377800..17382890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29270NANA2+17384524..17385650hypothetical protein
LOC_Os02g29280Os.54691.1.S1_x_at3/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_x_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29290NANA2+17397604..17398845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2789.1.S1_at--314--1791Chr02:17374239..17374263 (25 bp)
ACCGCGAGACGCACAGGCAAGTGCT
LOC_Os02g29250
OsAffx.2789.1.S1_at--404--8231Chr02:17374224..17374248 (25 bp)
GGCAAGTGCTGCTCAGGTTCTACAT
LOC_Os02g29250
OsAffx.2789.1.S1_at--883--9631Chr02:17374212..17374236 (25 bp)
TCAGGTTCTACATGGCCTGCTGCAT
LOC_Os02g29250
OsAffx.2789.1.S1_at--648--10511Chr02:17374180..17374204 (25 bp)
TTCAAGCACGACATCAGGGAGCTCG
LOC_Os02g29250
OsAffx.2789.1.S1_at--358--5411Chr02:17374142..17374166 (25 bp)
GAAGCCCTGCCATGAGCTGGAGCTG
LOC_Os02g29250
OsAffx.2789.1.S1_at--430--2971Chr02:17374116..17374140 (25 bp)
AATGGACGCGGCAGCTCTCCGCCGA
LOC_Os02g29250
OsAffx.2789.1.S1_at--974--8011Chr02:17373951..17373975 (25 bp)
GGAGGATGATCCAGGCCTTCTTCCA
LOC_Os02g29250
OsAffx.2789.1.S1_at--726--2171Chr02:17373891..17373915 (25 bp)
ACACGCGCATCGACCGGAGCTTGAT
LOC_Os02g29250
OsAffx.2789.1.S1_at--383--7091Chr02:17373838..17373862 (25 bp)
GTCAACCGCCTGTGGGACGCGCGCA
LOC_Os02g29250
OsAffx.2789.1.S1_at--202--5811Chr02:17373823..17373847 (25 bp)
GACGCGCGCAGGATCATCGCCGTGT
LOC_Os02g29250
OsAffx.2789.1.S1_at--952--971Chr02:17373732..17373756 (25 bp)
AGGAGTTGCTCAACGGTCGAGCCAA
LOC_Os02g29250
Target Sequence 
ACCGCGAGACGCACAGGCAAGTGCTGCTCAGGTTCTACATGGCCTGCTGCATCTCCGACTTCAAGCACGACATCAGGGAG
CTCGTGGAGGCCTACCTGAAGCCCTGCCATGAGCTGGAGCTGGAATGGACGCGGCAGCTCTCCGCCGACCGCACCGCCGC
CATGGACCACCTGCTCTTCGTCGGCCTCGACGCCACCGAGCCGCCTGAGCCGCAGCAGCAGCTGCAGGAGGAGGAGGAGG
AGGACCCGCCGGTGAGCGCGGCCGGGTTCGTGGACCGGGTGCACATGCGGAGGATGATCCAGGCCTTCTTCCACCCGGAC
ATGGCCGACGTGGAGGACGAGGGGAAGGACACGCGCATCGACCGGAGCTTGATGGCCAACTTCATGGCCGCCACCGGCTT
CGTCAACCGCCTGTGGGACGCGCGCAGGATCATCGCCGTGTGCCGCGACGGCGGCATGGACGACGCCGCGCGCGAGGCGG
CCGCGGCGGGGATGCTGCGTCGGCTGGAGGAGTTGCTCAACGGTCGAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis