Browse Element(s) Details


Os.16796.1.S1_at

Description gb:BI803321
DB_XREF= gi:16576025
DB_XREF=H106H09
CLONE=H106H09
TID=Os.16796.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.16796 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187122.1 (A.thaliana) ankyrin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2914010/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16796.1.S1_at--286--9831Chr02:17257764..17257788 (25 bp)
TAAAGGATATACACCTCTCCATGTG
LOC_Os02g29140
Os.16796.1.S1_at--519--2911Chr02:17257762..17257786 (25 bp)
AAGGATATACACCTCTCCATGTGGC
LOC_Os02g29140
Os.16796.1.S1_at--175--7951Chr02:17257760..17257784 (25 bp)
GGATATACACCTCTCCATGTGGCAG
LOC_Os02g29140
Os.16796.1.S1_at--1120--331Chr02:17257756..17257780 (25 bp)
ATACACCTCTCCATGTGGCAGCTAT
LOC_Os02g29140
Os.16796.1.S1_at--1037--1731Chr02:17257752..17257776 (25 bp)
ACCTCTCCATGTGGCAGCTATTAAA
LOC_Os02g29140
Os.16796.1.S1_at--144--3811NONE
CTCCATGTGGCAGCTATTAAAGGTC
NONE
Os.16796.1.S1_at--159--451Chr02:17257699..17257723 (25 bp)
ATCTATTATCATATGCATGCAGGAC
LOC_Os02g29140
Os.16796.1.S1_at--669--6831Chr02:17257657..17257681 (25 bp)
GTTTCTATACCGGAGGGTTGTAGAT
LOC_Os02g29140
Os.16796.1.S1_at--284--4251Chr02:17257648..17257672 (25 bp)
CCGGAGGGTTGTAGATAATGAAATT
LOC_Os02g29140
Os.16796.1.S1_at--934--3431Chr02:17257618..17257642 (25 bp)
CAGATTGTGAGATATCTTGCTGGAC
LOC_Os02g29140
Os.16796.1.S1_at--661--371Chr02:17257547..17257571 (25 bp)
ATCAACATTTCATGGATAGGACAGT
LOC_Os02g29140
Target Sequence 
TAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATGCNACATTGAATACATATCTATTATCATAT
GCATGCAGGACNCCTGCTTTAAGAGTTTTGTTTCTATACCGGAGGGTTGTAGATAATGAAATTTGCNACAGATTGTGAGA
TATCTTGCTGGACAAGAACANGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACATTTCATGGATAGGA
CAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis