Browse Element(s) Details


OsAffx.2784.1.S1_s_at

Description tigr:9630.m02780
TID=OsAffx.2784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ankyrin-like protein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2914011/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2784.1.S1_s_at--580--7831Chr02:17253047..17253071 (25 bp)
GGTCAATGCATTGCAGGATGCTCAA
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--859--3111Chr02:17253023..17253047 (25 bp)
AATTTGCAGGTTGATGCATTCTGAC
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--825--4831Chr02:17252369..17252393 (25 bp)
GCTCAACGACTCTTACCAAAGTTTC
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--21--3772Chr02:17252360..17252384 (25 bp)
CTCTTACCAAAGTTTCGTCTCTGAA
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--775--3731Chr02:17252342..17252366 (25 bp)
CTCTGAAGAAAGTCGGTGGGTTGCC
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--8--10671Chr02:17252322..17252346 (25 bp)
TTGCCTCGGAGGTAAGGTACTCCCT
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--1098--6951Chr02:17252175..17252199 (25 bp)
GTAGCTGGCTCACAGGAAGACTCCG
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--283--5371Chr02:17252160..17252184 (25 bp)
GAAGACTCCGGTTTAGATCCTGAAC
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--849--10031Chr02:17252147..17252171 (25 bp)
TAGATCCTGAACTAATACGGGCAGA
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--948--3091Chr02:17252134..17252158 (25 bp)
AATACGGGCAGACAGGCACCTTTGT
LOC_Os02g29140
OsAffx.2784.1.S1_s_at--606--8251Chr02:17252120..17252144 (25 bp)
GGCACCTTTGTACATTCTGTGTTAC
LOC_Os02g29140
Target Sequence 
GGTCAATGCATTGCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTG
CTCAAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGGATCCAGCAAGTGATGAG
ATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTC
TCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGT
AAATAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCG
GAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTACATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAG
CTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2784.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis