Browse Element(s) Details


OsAffx.12262.1.S1_at

Description tigr:9630.m02767
TID=OsAffx.12262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY116170 putative germin E protein precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2901010/11Cupin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12262.1.S1_at--353--7091Chr02:17164243..17164267 (25 bp)
GTCACACTGGTGTCGGCTCTATTAG
LOC_Os02g29010
OsAffx.12262.1.S1_at--136--4811Chr02:17164258..17164282 (25 bp)
GCTCTATTAGCTCTGGATCACCAAA
LOC_Os02g29010
OsAffx.12262.1.S1_at--507--8571Chr02:17164271..17164295 (25 bp)
TGGATCACCAAACGGAGGCCATCAC
LOC_Os02g29010
OsAffx.12262.1.S1_at--393--3831NONE
CTGCCCGCCCGATTGAATGTGGTGG
NONE
OsAffx.12262.1.S1_at--420--5431Chr02:17165841..17165865 (25 bp)
GAACCTGGAGTTTTTCGGCCAAGCA
LOC_Os02g29010
OsAffx.12262.1.S1_at--413--4691Chr02:17165907..17165931 (25 bp)
GCGGCCTTGGACTCTGGTGAACTCA
LOC_Os02g29010
OsAffx.12262.1.S1_at--541--2811Chr02:17165951..17165975 (25 bp)
AAGATCTTTTCAGGGCTGCGAGCAC
LOC_Os02g29010
OsAffx.12262.1.S1_at--638--5611Chr02:17166603..17166627 (25 bp)
GACAAGCCCGGCTAGGTTATGGCTA
LOC_Os02g29010
OsAffx.12262.1.S1_at--1055--1051Chr02:17166629..17166653 (25 bp)
AGGGAGGCCTTCGACTCGTTGTGCA
LOC_Os02g29010
OsAffx.12262.1.S1_at--964--3271Chr02:17166706..17166730 (25 bp)
CAAAAACTGCATGGCGGCGTAGGTC
LOC_Os02g29010
OsAffx.12262.1.S1_at--148--4631Chr02:17166722..17166746 (25 bp)
GCGTAGGTCTACAGGGCTATCCAGG
LOC_Os02g29010
Target Sequence 
GTCACACTGGTGTCGGCTCTATTAGCTCTGGATCACCAAACGGAGGCCATCACACCGGCTCACTGGCTGCCCGCCCGATT
GAATGTGGTGGGTTGGGCATAATGAACCTGGAGTTTTTCGGCCAAGCACTTCGACTAAAATGGCTAGCACAAAGACTAGA
GCAGAAGGGGCGGCCTTGGACTCTGGTGAACTCAAGACCAACAACCGATAAGCAAGATCTTTTCAGGGCTGCGAGCACTT
TAGAGGGTTTGGAGAATGCTGACAGGATAGTTGGAGGTGCAGTTCCTACTGCTAGAAGAAGGGATCGAAGGGCTATCAAA
GTGGTGGCGACAAGCCCGGCTAGGTTATGGCTACAGGGAGGCCTTCGACTCGTTGTGCATGCTTGTTTGCTGGGTGGTTT
GGAAAGAAAGGAATGTCAGGATTTTCGAGCACAAAAACTGCATGGCGGCGTAGGTCTACAGGGCTATCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis