Browse Element(s) Details


OsAffx.12260.1.S1_at

Description tigr:9630.m02765
TID=OsAffx.12260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28960NANA2+17131543..17133346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12260.1.S1_at--470--6331Chr02:17158607..17158631 (25 bp)
GATGCACCTACGTCTGACTTGGGAG
LOC_Os02g28990
OsAffx.12260.1.S1_at--371--6212Chr07:21781076..21781095 (20 bp)
GAGGCGGAGTCATCTACTCCTTGAA
NONE
OsAffx.12260.1.S1_at--873--6511Chr02:17158560..17158584 (25 bp)
GATTTCGTTGTTCATCAAAGCCCAT
LOC_Os02g28990
OsAffx.12260.1.S1_at--1021--5931Chr02:17158521..17158545 (25 bp)
GAGCAGCCCTCATGCAGCGAAGGAA
LOC_Os02g28990
OsAffx.12260.1.S1_at--407--5491Chr02:17158499..17158523 (25 bp)
GAACAGGTGTTCCACATCCTTGGCG
LOC_Os02g28990
OsAffx.12260.1.S1_at--674--2671Chr02:17158429..17158453 (25 bp)
AAGCGGCGCTCATTAGTGTAAATAC
LOC_Os02g28990
OsAffx.12260.1.S1_at--226--2791Chr02:17158381..17158405 (25 bp)
AAGAGTTTGCACTTCGTCTGACCAA
LOC_Os02g28990
OsAffx.12260.1.S1_at--583--8231Chr02:17158065..17158089 (25 bp)
GGCAAAGGGCTGTCCGATCCACTGA
LOC_Os02g28990
OsAffx.12260.1.S1_at--151--6371Chr02:17158050..17158074 (25 bp)
GATCCACTGATCATCCCAGAACGAT
LOC_Os02g28990
OsAffx.12260.1.S1_at--519--5451Chr02:17158032..17158056 (25 bp)
GAACGATATGGAAGTCCCGTCACCC
LOC_Os02g28990
OsAffx.12260.1.S1_at--317--7451Chr02:17157992..17158016 (25 bp)
GTGTCGTCGAAATTCTGGGATCCCA
LOC_Os02g28990
Target Sequence 
GATGCACCTACGTCTGACTTGGGAGGCGGAGTCATCTACTCCTTGAAGATTTCGTTGTTCATCAAAGCCCATGGAAGCCT
AGGCCCGAGCAGCCCTCATGCAGCGAAGGAACAGGTGTTCCACATCCTTGGCGCAGTCGCAGAAGCAGCATTGAGGAGAG
GGTGCAATTCCTCTGCGGAAGCGGCGCTCATTAGTGTAAATACGTCATTTATGTACAGTCCACAGGAAGAGTTTGCACTT
CGTCTGACCAAAATTCGTCCAAATATTTTTCCAGAAGGGGTCTGTTGCAGCTACCCCAAAACACTGGGAGTAAGCTGCAA
GCATGGAGGGTGGATGAAAAGAAGTGGTTTGGCCGAGTACAGTGAGAATGGATGGCAGGGAAGCGGTGGGCAAAGGGGCA
AAGGGCTGTCCGATCCACTGATCATCCCAGAACGATATGGAAGTCCCGTCACCCAAGGATCGCACAAGTGTGTCGTCGAA
ATTCTGGGATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis