Browse Element(s) Details


Os.53328.1.S1_at

Description gb:AK109723.1
DB_XREF= gi:32994932
TID=Os.53328.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B05, full insert sequence.
FL= gb:AK109723.1 gb:AK072013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3718011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37150NANA9+21429663..21432262hypothetical protein
LOC_Os09g37160Os.31312.2.S1_x_at5/119+21433408..21436663retrotransposon protein, putative, unclassified
LOC_Os09g37160Os.31312.5.S1_x_at4/119+21433408..21436663retrotransposon protein, putative, unclassified
LOC_Os09g37170NANA9+21437297..21443368retrotransposon protein, putative, unclassified
LOC_Os09g37180Os.53328.1.S1_at11/119+21450103..21452158Transferase family protein, expressed
LOC_Os09g37180OsAffx.18024.1.S1_x_at4/119+21450103..21452158Transferase family protein, expressed
LOC_Os09g37200OsAffx.18024.1.S1_x_at11/119+21463220..21464578Transferase family protein, expressed
LOC_Os09g37210NANA9+21473144..21476460transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53328.1.S1_at--435--5211Chr09:21451728..21451752 (25 bp)
GAATTAACCATTTCTTTTCACCATT
LOC_Os09g37180
Os.53328.1.S1_at--669--10331Chr09:21451743..21451767 (25 bp)
TTTCACCATTTTGTACGTATGCATG
LOC_Os09g37180
Os.53328.1.S1_at--1015--631Chr09:21451761..21451785 (25 bp)
ATGCATGTGCATGGGTACGTACAAA
LOC_Os09g37180
Os.53328.1.S1_at--927--6751Chr09:21451799..21451823 (25 bp)
GTTACAGGCTGGGTACTTAGTACGT
LOC_Os09g37180
Os.53328.1.S1_at--1099--6971Chr09:21451818..21451842 (25 bp)
GTACGTGCCAAATTGGTGCCAACGC
LOC_Os09g37180
Os.53328.1.S1_at--336--7871Chr09:21451885..21451909 (25 bp)
GGTTATTAGGTTGAAGCGCACGTTA
LOC_Os09g37180
Os.53328.1.S1_at--1019--8031Chr09:21451977..21452001 (25 bp)
GGAGTACTATATTTTCTTCTACTGT
LOC_Os09g37180
Os.53328.1.S1_at--463--8291Chr09:21452013..21452037 (25 bp)
GGCTTGGATTCATTTAGCTTGGATC
LOC_Os09g37180
Os.53328.1.S1_at--94--7571Chr09:21452040..21452064 (25 bp)
GGGCGTTTCCATGTTTCACCAAGTT
LOC_Os09g37180
Os.53328.1.S1_at--436--3311Chr09:21452084..21452108 (25 bp)
CACACTGTATGTAAACCGGTCTAGT
LOC_Os09g37180
Os.53328.1.S1_at--719--8151Chr09:21452133..21452157 (25 bp)
GGAAATGTTGCTTGGAATTCGGCTA
LOC_Os09g37180
Target Sequence 
GAATTAACCATTTCTTTTCACCATTTTGTACGTATGCATGTGCATGGGTACGTACAAAAAGAAAGGAAAAGGTTACAGGC
TGGGTACTTAGTACGTGCCAAATTGGTGCCAACGCGGGGGGTGGTTAGATGTCGAGGTTATCAATTTGGTGAGGGGTGGT
TATTAGGTTGAAGCGCACGTTAATTAATCAAATTAATTATAAGGCGTTTGCTTGTTTGTTTACGAATTACGACAACGTAT
ACAGTACGAGGAGTACTATATTTTCTTCTACTGTTTTTTTTTTTCTGGCTTGGATTCATTTAGCTTGGATCAGGGGCGTT
TCCATGTTTCACCAAGTTTTGGATGATATCTGTGTAACACACTGTATGTAAACCGGTCTAGTATAGTATTTGTTTAAGAG
GTGAATGGAAATGTTGCTTGGAATTCGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis