Browse Element(s) Details


Os.53349.1.S1_at

Description gb:AK072204.1
DB_XREF= gi:32982227
TID=Os.53349.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164K19, full insert sequence.
FL= gb:AK072204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5745011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57390OsAffx.3632.1.S1_at11/113+32670353..32670634hypothetical protein
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g57420Os.9341.1.S1_at11/113+32678700..32681277ML domain protein, putative, expressed
LOC_Os03g57430Os.17023.1.S1_a_at11/113+32683646..32689998expressed protein
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57470NANA3+32702094..32705234retrotransposon protein, putative, unclassified
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53349.1.S1_at--3--6051Chr03:32693746..32693770 (25 bp)
GAGATCTACGCACTCATGCAAGCCG
LOC_Os03g57450
Os.53349.1.S1_at--877--6551Chr03:32693909..32693933 (25 bp)
GATTACGGTGAGTTCATCGCTGCAA
LOC_Os03g57450
Os.53349.1.S1_at--210--531Chr03:32693951..32693975 (25 bp)
ATCGAGCGGGAGGATCACCTGTTCG
LOC_Os03g57450
Os.53349.1.S1_at--919--8791Chr03:32693970..32693994 (25 bp)
TGTTCGCGGCGTTCCAATACTTCGA
LOC_Os03g57450
Os.53349.1.S1_at--577--9451Chr03:32694051..32694075 (25 bp)
TCGGCTTGGGAGACGTTCAGCTCGA
LOC_Os03g57450
Os.53349.1.S1_at--202--1151Chr03:32694302..32694326 (25 bp)
AGTCCGGCGGGCTGCAGAACAGTTT
LOC_Os03g57450
Os.53349.1.S1_at--978--2131Chr03:32694320..32694344 (25 bp)
ACAGTTTCAGCATCGGCTTCAGGGA
LOC_Os03g57450
Os.53349.1.S1_at--969--5531Chr03:32694364..32694388 (25 bp)
GAAACAGCCACTAGAGTCAGTCACA
LOC_Os03g57450
Os.53349.1.S1_at--969--7111Chr03:32694379..32694403 (25 bp)
GTCAGTCACACACTTGTAGAGGCGA
LOC_Os03g57450
Os.53349.1.S1_at--374--10111Chr03:32694419..32694443 (25 bp)
TATGTTGTCTTCCATAGGGCTGGTA
LOC_Os03g57450
Os.53349.1.S1_at--639--7091Chr03:32694511..32694535 (25 bp)
GTCACTCTTGGGTCATTGGTTCGAT
LOC_Os03g57450
Target Sequence 
GAGATCTACGCACTCATGCAAGCCGCAGATGTAGATAACAGCGGCACGATAGATTACGGTGAGTTCATCGCTGCAACTCT
GCATATGAACAAGATCGAGCGGGAGGATCACCTGTTCGCGGCGTTCCAATACTTCGACAAGGACGGCAGCGGCTACATCA
CGGCCGATGAGCTGCAGCTCGCCTGCGAGGAGTTCGGCTTGGGAGACGTTCAGCTCGAGGAGATGATCAGAGAAGTCGAC
GAAGACAACGATGGTCGCATAGATTACAACGAGTTCGTGGCGATGATGCAGAAGCCGACGATGGGGCTCCCGGCGAAGAA
GTCCGGCGGGCTGCAGAACAGTTTCAGCATCGGCTTCAGGGAGGCCTTGAGGATGTCTTGGGAAACAGCCACTAGAGTCA
GTCACACACTTGTAGAGGCGACGACAACGAGATCGATATGTTGTCTTCCATAGGGCTGGTAATTTCGAAACGGGGAAAAA
AATGGCTGGAGGAGATGTGCGTGTACGTACAGGCGTAGAGGGGGGTGGGTCACTCTTGGGTCATTGGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis