Browse Element(s) Details


Os.53366.1.S1_at

Description gb:AK072294.1
DB_XREF= gi:32982317
TID=Os.53366.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013B15, full insert sequence.
FL= gb:AK072294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4192011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41879NANA3+23210136..23210582hypothetical protein
LOC_Os03g41890OsAffx.14751.1.S1_at8/113+23216368..23217093hypothetical protein
LOC_Os03g41899NANA3+23218724..23219170hypothetical protein
LOC_Os03g41910OsAffx.3479.1.S1_x_at11/113+23233153..23233389hypothetical protein
LOC_Os03g41920Os.53366.1.S1_at11/113+23234996..23239861expressed protein
LOC_Os03g41920Os.53366.1.S1_x_at11/113+23234996..23239861expressed protein
LOC_Os03g41926NANA3+23243567..23244260NA
LOC_Os03g41932OsAffx.3480.1.S1_at11/113+23244873..23245485hypothetical protein
LOC_Os03g41940OsAffx.25478.1.S1_at11/113+23248494..23249206hypothetical protein
LOC_Os03g41950Os.10731.1.A1_a_at11/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.38764.1.S1_x_at8/113+23254416..23256911hypothetical protein
LOC_Os03g41950OsAffx.13772.1.S1_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.27520.8.S1_x_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41950Os.10731.1.A1_at1/113+23254416..23256911hypothetical protein
LOC_Os03g41960Os.45173.1.S1_x_at6/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.8473.1.S1_x_at5/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41960OsAffx.10632.1.S1_at1/113+23257839..23273135retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53366.1.S1_at--179--3611Chr03:23235572..23235596 (25 bp)
CTTGTCTTTTGAGTACTAAAAGCAC
LOC_Os03g41920
Os.53366.1.S1_at--293--7011Chr03:23235560..23235584 (25 bp)
GTACTAAAAGCACACTTTTGTTCGT
LOC_Os03g41920
Os.53366.1.S1_at--331--2711Chr03:23235553..23235577 (25 bp)
AAGCACACTTTTGTTCGTTTTGTGT
LOC_Os03g41920
Os.53366.1.S1_at--379--3671Chr03:23235546..23235570 (25 bp)
CTTTTGTTCGTTTTGTGTGTAATAT
LOC_Os03g41920
Os.53366.1.S1_at--709--5891Chr03:23235517..23235541 (25 bp)
GAGCTGCATTATTTTATCCTTTTGT
LOC_Os03g41920
Os.53366.1.S1_at--133--10151Chr03:23235503..23235527 (25 bp)
TATCCTTTTGTTTATTTTGCTTTGT
LOC_Os03g41920
Os.53366.1.S1_at--571--1212Chr03:23235453..23235477 (25 bp)
AGTTTTGTCACCACACTGTTAGCTC
LOC_Os03g41920
Os.53366.1.S1_at--469--10812Chr03:23235449..23235473 (25 bp)
TTGTCACCACACTGTTAGCTCATAT
LOC_Os03g41920
Os.53366.1.S1_at--1072--7091Chr03:23235447..23235471 (25 bp)
GTCACCACACTGTTAGCTCATATAT
LOC_Os03g41920
Os.53366.1.S1_at--9--3311Chr03:23235442..23235466 (25 bp)
CACACTGTTAGCTCATATATTCTAA
LOC_Os03g41920
Os.53366.1.S1_at--1035--5671Chr03:23235278..23235302 (25 bp)
GACATATTTCATCTATATTATTTGG
LOC_Os03g41920
Target Sequence 
CTTGTCTTTTGAGTACTAAAAGCACACTTTTGTTCGTTTTGTGTGTAATATTTAGGAGCTGCATTATTTTATCCTTTTGT
TTATTTTGCTTTGTTTTGTTTTGTAAGCTAAAAGTACTTAGTTTTGTCACCACACTGTTAGCTCATATATTCTAAAATGT
TCACTAATATGTTCAACTTAATTAGTTTTGTAACCTCCTAAAATAGTTCTATTAGTTTTGTAACCTTCTAAAATATGAAT
TAGTTTTTGTCTGGCTGATCTTCCTTTGGTTAGGTACTACAAAGTCTTAATTCAGACATATTTCATCTATATTATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis