Browse Element(s) Details


Os.53373.1.S1_at

Description gb:AK072326.1
DB_XREF= gi:32982349
TID=Os.53373.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full insert sequence.
FL= gb:AK072326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1837411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18350Os.27691.1.S1_x_at3/1112+10594016..10599566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18350Os.27691.2.S1_x_at2/1112+10594016..10599566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18360Os.9565.1.S1_x_at11/1112+10603772..10609330NB-ARC domain containing protein, expressed
LOC_Os12g18374Os.53373.1.S1_at11/1112+10621450..10630781NB-ARC domain containing protein, expressed
LOC_Os12g18390OsAffx.2719.1.S1_at2/1112+10637376..10638485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18400OsAffx.30517.2.A1_at4/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18400OsAffx.448.1.S1_x_at1/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18410Os.9805.1.S1_at11/1112+10649374..10650768expressed protein
LOC_Os12g18420Os.46003.1.A1_x_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18420Os.46003.1.A1_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53373.1.S1_at--1085--4451Chr12:10630216..10630240 (25 bp)
GCCTCTCCGGGATCCAGATCAGACA
LOC_Os12g18374
Os.53373.1.S1_at--388--991Chr12:10630255..10630279 (25 bp)
AGGAGGTCGCACTCGATTCTCGAGT
LOC_Os12g18374
Os.53373.1.S1_at--536--8011Chr12:10630318..10630342 (25 bp)
GGAGGCATCCGAACAGGCCCAGCAT
LOC_Os12g18374
Os.53373.1.S1_at--468--4351Chr12:10630336..10630360 (25 bp)
CCAGCATCTTGCTCCTGAAGAACAG
LOC_Os12g18374
Os.53373.1.S1_at--1103--6751Chr12:10630360..10630384 (25 bp)
GTTACAGTACTGTCCTGCCTGACGA
LOC_Os12g18374
Os.53373.1.S1_at--896--4911Chr12:10630418..10630442 (25 bp)
GCTTGCTCGGGAGAAATCTGCACCT
LOC_Os12g18374
Os.53373.1.S1_at--558--7331Chr12:10630495..10630519 (25 bp)
GTGCATTTCAATTGGCGAATTCCAC
LOC_Os12g18374
Os.53373.1.S1_at--141--8191Chr12:10630581..10630605 (25 bp)
GGAAGCACTAATGCAGTGCCCATGG
LOC_Os12g18374
Os.53373.1.S1_at--278--1271Chr12:10630609..10630633 (25 bp)
AGATAAATTCTACTGGCTCCATCAA
LOC_Os12g18374
Os.53373.1.S1_at--1112--1371Chr12:10630636..10630660 (25 bp)
AGACCGAGGTCTCCAATAGAGGGAA
LOC_Os12g18374
Os.53373.1.S1_at--1119--5711Chr12:10630683..10630707 (25 bp)
GACTGCTGTCCCTACCATGAGGTAA
LOC_Os12g18374
Target Sequence 
GCCTCTCCGGGATCCAGATCAGACACCTCCAGCGTCTCAAGGAGGTCGCACTCGATTCTCGAGTGAGCGAGGGCACGAAG
CGAGAGTGGGAGGCAGAGGCCAGGAGGCATCCGAACAGGCCCAGCATCTTGCTCCTGAAGAACAGTTACAGTACTGTCCT
GCCTGACGACACTGACAGATTGGATGATCAGATGGACGGGGAGCTTGCTCGGGAGAAATCTGCACCTGATGATGATGCTG
GCAACCAGGAGCAGATTGCGGAGGTGGAATCAGAAAGCAGTGCATTTCAATTGGCGAATTCCACTATGAATAATTCAGTC
GCTGGAAAGGAATCAACAGCTGATGATGCTGATGAAGAAGGATTGGGAAGCACTAATGCAGTGCCCATGGAGCAGATAAA
TTCTACTGGCTCCATCAATGAGACCGAGGTCTCCAATAGAGGGAAATTCACAATGTCATATTTTGAGGACTGCTGTCCCT
ACCATGAGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis