Browse Element(s) Details


Os.53397.1.S1_at

Description gb:AK072436.1
DB_XREF= gi:32982459
TID=Os.53397.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101E23, full insert sequence.
FL= gb:AK072436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4481011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44760OsAffx.26408.1.S1_at1/116+27042127..27044831hypothetical protein
LOC_Os06g44770OsAffx.28107.1.S1_at10/116+27045715..27046929hypothetical protein
LOC_Os06g44770Os.21891.1.S1_at3/116+27045715..27046929hypothetical protein
LOC_Os06g44780NANA6+27053294..27053782hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_s_at11/116+27057830..27060488hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_at7/116+27057830..27060488hypothetical protein
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein
LOC_Os06g44820OsAffx.15926.1.S1_at10/116+27074173..27075641hypothetical protein
LOC_Os06g44830NANA6+27081760..27082020hypothetical protein
LOC_Os06g44840OsAffx.15929.2.S1_s_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840OsAffx.15929.1.S1_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_s_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53397.1.S1_at--246--9651Chr06:27072824..27072848 (25 bp)
TCAGAGATCGACTTGCTAGAGCAAA
LOC_Os06g44810
Os.53397.1.S1_at--521--8071Chr06:27072865..27072889 (25 bp)
GGAGCAGTCACCAGATTTAGGCGAT
LOC_Os06g44810
Os.53397.1.S1_at--806--8871Chr06:27072949..27072973 (25 bp)
TGATGTCCTCAAATCTGTCCATGGT
LOC_Os06g44810
Os.53397.1.S1_at--955--5071Chr06:27073028..27073052 (25 bp)
GCAGCCTTCACTCTTGTACAGATGT
LOC_Os06g44810
Os.53397.1.S1_at--1125--7171Chr06:27073051..27073075 (25 bp)
GTCTGTTCCATCTGACATGTGTATC
LOC_Os06g44810
Os.53397.1.S1_at--266--6991Chr06:27073111..27073135 (25 bp)
GTACCCAGTAGTCTAACTTATGTCT
LOC_Os06g44810
Os.53397.1.S1_at--828--7431Chr06:27073173..27073197 (25 bp)
GTGTAGTGCATGTCACAAACTTCAT
LOC_Os06g44810
Os.53397.1.S1_at--135--10271Chr06:27073197..27073221 (25 bp)
TTTGATGCATTTCTGGCTCTTGCAC
LOC_Os06g44810
Os.53397.1.S1_at--670--9031Chr06:27073217..27073241 (25 bp)
TGCACTCCTGCTGTCTATGTGTAAA
LOC_Os06g44810
Os.53397.1.S1_at--606--9931Chr06:27073258..27073282 (25 bp)
TACGTTTGACAAAGCTCCGGATCTT
LOC_Os06g44810
Os.53397.1.S1_at--533--4791Chr06:27073271..27073295 (25 bp)
GCTCCGGATCTTGTCTGGATCAGAA
LOC_Os06g44810
Target Sequence 
TCAGAGATCGACTTGCTAGAGCAAAGTAAATTGGCACTGATGGAGCAGTCACCAGATTTAGGCGATATTCCGGTGAAGAG
ACCAGTTGGGAGGCCAAGGAAGGCAAAATGAATGCTAGACAAATTTGATGTCCTCAAATCTGTCCATGGTCTTATGTATA
TCATCTCTGAAGAACCTGAAAAGTCACAATCTCTGAAGGACATTGCAGCCTTCACTCTTGTACAGATGTCTGTTCCATCT
GACATGTGTATCAAGTATTAGACAGAAGGAAAGGGNAAACATTGNCATGTACCCAGTAGTCTAACTTATGTCTGNTAATT
GGNAAATGTAGTAATGTACTCAACATGTAGGTGTAGTGCATGTCACAAACTTCATTTGATGCATTTCTGGCTCTTGCACT
CCTGCTGTCTATGTGTAAAGTTCTGATATTCAGGGTACGTTTGACAAAGCTCCGGATCTTGTCTGGATCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis