CREP Browser

Description

gb:AK072553.1
DB_XREF= gi:32982576
TID=Os.53425.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125O07, full insert sequence.
FL= gb:AK072553.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g51680	10/11	Ubiquitin ligase protein FANCL, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g51660	OsAffx.25680.1.S1_at	10/11	3	+	29533678..29535394	hypothetical protein
LOC_Os03g51670	Os.54070.1.S1_at	11/11	3	+	29536489..29541868	serine esterase family protein, expressed
LOC_Os03g51680	Os.53824.1.S1_x_at	11/11	3	+	29543527..29546348	Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51680	Os.53425.1.S1_at	10/11	3	+	29543527..29546348	Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51690	Os.151.2.S1_at	11/11	3	+	29546838..29557422	Homeobox protein OSH1, putative, expressed
LOC_Os03g51690	Os.151.1.S1_x_at	10/11	3	+	29546838..29557422	Homeobox protein OSH1, putative, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53425.1.S1_at--373--653	1	Chr03:29543616..29543640 (25 bp)	GATTTAGCATATAGTCGAGTCTCGA	LOC_Os03g51680
Os.53425.1.S1_at--631--1019	1	Chr03:29543607..29543631 (25 bp)	TATAGTCGAGTCTCGAGACATCATC	LOC_Os03g51680
Os.53425.1.S1_at--554--567	1	Chr03:29543591..29543615 (25 bp)	GACATCATCGATGGAGCGGCATGAG	LOC_Os03g51680
Os.53425.1.S1_at--1030--41	1	Chr03:29543588..29543612 (25 bp)	ATCATCGATGGAGCGGCATGAGGTC	LOC_Os03g51680
Os.53425.1.S1_at--403--809	1	Chr03:29543579..29543603 (25 bp)	GGAGCGGCATGAGGTCTTCGCCGTC	LOC_Os03g51680
Os.53425.1.S1_at--424--1065	1	Chr03:29543563..29543587 (25 bp)	TTCGCCGTCCGCTTCTAGAGAGATG	LOC_Os03g51680
Os.53425.1.S1_at--1120--449	1	Chr03:29543560..29543584 (25 bp)	GCCGTCCGCTTCTAGAGAGATGAGA	LOC_Os03g51680
Os.53425.1.S1_at--403--725	1	Chr03:29543557..29543581 (25 bp)	GTCCGCTTCTAGAGAGATGAGAATC	LOC_Os03g51680
Os.53425.1.S1_at--332--891	1	Chr03:29543540..29543564 (25 bp)	TGAGAATCAAATTGTCCTGGTGACC	LOC_Os03g51680
Os.53425.1.S1_at--1146--223	1	Chr03:29543532..29543556 (25 bp)	AAATTGTCCTGGTGACCGAGTCAGT	LOC_Os03g51680
Os.53425.1.S1_at--186--723	1	Chr03:29543527..29543551 (25 bp)	GTCCTGGTGACCGAGTCAGTTAATC	NONE

Target Sequence

GATTTAGCATATAGTCGAGTCTCGAGACATCATCGATGGAGCGGCATGAGGTCTTCGCCGTCCGCTTCTAGAGAGATGAG
AATCAAATTGTCCTGGTGACCGAGTCAGTTAATC

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details