Browse Element(s) Details


Os.53520.1.A1_at

Description gb:AK073068.1
DB_XREF= gi:32983091
TID=Os.53520.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020K05, full insert sequence.
FL= gb:AK073068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4014011/11F-box domain containing protein, expressed
LOC_Os12g390701/11TATA-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40100OsAffx.32113.1.S1_s_at11/1112+24759591..24764791expressed protein
LOC_Os12g40100OsAffx.32113.1.S1_at7/1112+24759591..24764791expressed protein
LOC_Os12g40109NANA12+24775690..24776464NA
LOC_Os12g40120NANA12+24784514..24786500B3 DNA binding domain containing protein, expressed
LOC_Os12g40130OsAffx.20045.1.S1_at11/1112+24787558..24788961Adenine phosphoribosyltransferase 1, putative
LOC_Os12g40140Os.53520.1.A1_at11/1112+24789724..24790967F-box domain containing protein, expressed
LOC_Os12g40150OsAffx.20046.1.S1_at10/1112+24793200..24794916expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003702molecular_functionRNA polymerase II transcription factor activity
GO:0017025molecular_functionTATA-binding protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53520.1.A1_at--365--1071Chr12:24790392..24790416 (25 bp)
AGGGATACTATGTTGCCATCTCTGC
LOC_Os12g40140
Os.53520.1.A1_at--943--10731Chr12:24790417..24790441 (25 bp)
TTGCAATCTTCCTCGGTTCAGAATG
LOC_Os12g40140
Os.53520.1.A1_at--795--5271Chr12:24790437..24790461 (25 bp)
GAATGCACCAAGGTTGTTCGCGCTA
LOC_Os12g40140
Os.53520.1.A1_at--268--8791Chr12:24790451..24790475 (25 bp)
TGTTCGCGCTAGCAAATGTGTCGGC
LOC_Os12g40140
Os.53520.1.A1_at--151--451Chr12:24790494..24790518 (25 bp)
ATCTACTTCATGCACAGGACTTTTG
LOC_Os12g40140
Os.53520.1.A1_at--164--3051Chr12:24790520..24790544 (25 bp)
CAATCCGTCCCGAGAGTACTTTGGT
LOC_Os12g40140
Os.53520.1.A1_at--764--3891Chr12:24790635..24790659 (25 bp)
CTGTGTCTCAAACGCCAGTTTCTGA
LOC_Os12g40140
Os.53520.1.A1_at--901--10652Chr12:24790668..24790692 (25 bp)
TTCCCTGCTGATGTGTAACTGCTTT
LOC_Os12g40140
Os.53520.1.A1_at--308--6251Chr12:24790773..24790797 (25 bp)
GATGGTTGAACATTCTCTGTGCAAG
LOC_Os12g40140
Os.53520.1.A1_at--823--211Chr12:24790849..24790873 (25 bp)
ATTTGTTGTCTTGATGTCTGGTTGA
LOC_Os12g40140
Os.53520.1.A1_at--850--851Chr12:24790878..24790902 (25 bp)
ATGGCTTGGTGCTGACATGTGTGTT
LOC_Os12g40140
Target Sequence 
AGGGATACTATGTTGCCATCTCTGCTTGCAATCTTCCTCGGTTCAGAATGCACCAAGGTTGTTCGCGCTAGCAAATGTGT
CGGCGGAGTTCAAGAAGATTGCATCTACTTCATGCACAGGACTTTTGACAATCCGTCCCGAGAGTACTTTGGTCCGTGNG
TCGATCCTCTTGGCGACTCTGGTGTGTACAACATGACAAATCGGAGGATCACTCCATTNCTTCCGGAGGCTGTGATGGAA
AAGCTGTGTCTCAAACGCCAGTTTCTGACTNGGTTCTTCCCTGCTGATGTGTAACTGCTTTGTTGGCTTAAATGATTGTT
TCTGTTATGGAAAAAGCAGTATGGTAGATTCTAGCTATTATGCAAACTTTAGAATCCTTTTGATGGTTGAACATTCTCTG
TGCAAGGTATGCAAAATTTAGATCCTCTTGATGGTAAATNTTTCCATGCTATGNAAAATTTGTTGTCTTGATGTCTGGTT
GAAGAAATGGCTTGGTGCTGACATGTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53520.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis