Browse Element(s) Details


OsAffx.20045.1.S1_at

Description tigr:9640.m03921
TID=OsAffx.20045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=adenine phosphoribosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4013011/11Adenine phosphoribosyltransferase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40100OsAffx.32113.1.S1_s_at11/1112+24759591..24764791expressed protein
LOC_Os12g40100OsAffx.32113.1.S1_at7/1112+24759591..24764791expressed protein
LOC_Os12g40109NANA12+24775690..24776464NA
LOC_Os12g40120NANA12+24784514..24786500B3 DNA binding domain containing protein, expressed
LOC_Os12g40130OsAffx.20045.1.S1_at11/1112+24787558..24788961Adenine phosphoribosyltransferase 1, putative
LOC_Os12g40140Os.53520.1.A1_at11/1112+24789724..24790967F-box domain containing protein, expressed
LOC_Os12g40150OsAffx.20046.1.S1_at10/1112+24793200..24794916expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20045.1.S1_at--380--3251Chr12:24787650..24787809 (25 bp)
CAAGCCAGGGATCTCGTTTCAGGAT
LOC_Os12g40130
OsAffx.20045.1.S1_at--176--10331Chr12:24787801..24787825 (25 bp)
TTTCAGGATGTCACGGGTATATTTC
LOC_Os12g40130
OsAffx.20045.1.S1_at--691--7851Chr12:24787816..24787840 (25 bp)
GGTATATTTCACAAACCGGAGGTAT
LOC_Os12g40130
OsAffx.20045.1.S1_at--397--6151Chr12:24787834..24787858 (25 bp)
GAGGTATTCCGTGATGCCATCGGGC
LOC_Os12g40130
OsAffx.20045.1.S1_at--49--511Chr12:24787852..24787876 (25 bp)
ATCGGGCTGTTCGTCGAGAGGTACA
LOC_Os12g40130
OsAffx.20045.1.S1_at--297--7831Chr12:24787887..24788166 (25 bp)
GGTCACTCTTGTAGCTGGCATTGAA
LOC_Os12g40130
OsAffx.20045.1.S1_at--1008--1551Chr12:24788166..24788190 (25 bp)
AGCTAGAGGGTTCTTTTTCGCTCCA
LOC_Os12g40130
OsAffx.20045.1.S1_at--1009--10371Chr12:24788180..24788204 (25 bp)
TTTTCGCTCCAACCATTGCATTAGA
LOC_Os12g40130
OsAffx.20045.1.S1_at--573--2451Chr12:24788241..24788378 (25 bp)
AAAATTGCCAGGTGAGGTGATCTCA
LOC_Os12g40130
OsAffx.20045.1.S1_at--737--711Chr12:24788464..24788488 (25 bp)
ATGATCTCATTGCTACCGGTGGAAC
LOC_Os12g40130
OsAffx.20045.1.S1_at--319--8691Chr12:24788493..24788514 (22 bp)
TGTGCAGCCGTCAAACTTCTTGAAC
LOC_Os12g40130
Target Sequence 
CAAGCCAGGGATCTCGTTTCAGGATGTCACGGGTATATTTCACAAACCGGAGGTATTCCGTGATGCCATCGGGCTGTTCG
TCGAGAGGTACAAGGGCAAAGGGGTCACTCTTGTAGCTGGCATTGAAGCTAGAGGGTTCTTTTTCGCTCCAACCATTGCA
TTAGAGGTAGGAGCAAAGTTTGTTCCACTAAGGAAGCCGAGAAAATTGCCAGGTGAGGTGATCTCAGAAGAATATTCTCT
GGAATATGGAACAGATAAAATAGAAATGCAAATAGGAGCTGTAGAGCCAAATGATCGAGCTATCATCGTTGATGATCTCA
TTGCTACCGGTGGAACCCTCTGTGCAGCCGTCAAACTTCTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis