Browse Element(s) Details


OsAffx.20046.1.S1_at

Description tigr:9640.m03923
TID=OsAffx.20046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4015010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40109NANA12+24775690..24776464NA
LOC_Os12g40120NANA12+24784514..24786500B3 DNA binding domain containing protein, expressed
LOC_Os12g40130OsAffx.20045.1.S1_at11/1112+24787558..24788961Adenine phosphoribosyltransferase 1, putative
LOC_Os12g40140Os.53520.1.A1_at11/1112+24789724..24790967F-box domain containing protein, expressed
LOC_Os12g40150OsAffx.20046.1.S1_at10/1112+24793200..24794916expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20046.1.S1_at--640--8751Chr12:24794364..24794388 (25 bp)
TGTACTAACACTCCAGAACCAGAAC
LOC_Os12g40150
OsAffx.20046.1.S1_at--489--5431Chr12:24794349..24794373 (25 bp)
GAACCAGAACAACCATTCAAGCAAA
LOC_Os12g40150
OsAffx.20046.1.S1_at--503--2331Chr12:24794323..24794347 (25 bp)
AAAGAATTTACACATCAGCAGGGAG
LOC_Os12g40150
OsAffx.20046.1.S1_at--431--2071Chr12:24794312..24794336 (25 bp)
ACATCAGCAGGGAGGAACCAGGTCA
LOC_Os12g40150
OsAffx.20046.1.S1_at--801--3451Chr12:24794294..24794318 (25 bp)
CAGGTCAGAAACTGGCGTTTGAGAC
LOC_Os12g40150
OsAffx.20046.1.S1_at--951--6851Chr12:24794278..24794302 (25 bp)
GTTTGAGACGCAGCTCTGCCATCAC
LOC_Os12g40150
OsAffx.20046.1.S1_at--123--391Chr12:24794261..24794282 (22 bp)
ATCACGGCCTCTGGAAGCAAGTCGA
LOC_Os12g40150
OsAffx.20046.1.S1_at--68--9471NONE
TCTGGAAGCAAGTCGAGCAGGCCGC
NONE
OsAffx.20046.1.S1_at--1021--2091Chr12:24793369..24793393 (25 bp)
ACATGCGGACGTTCCTAGCGGAAGC
LOC_Os12g40150
OsAffx.20046.1.S1_at--780--5411Chr12:24793349..24793373 (25 bp)
GAAGCGCGTGCCTACTGGCTGCTTG
LOC_Os12g40150
OsAffx.20046.1.S1_at--857--9911Chr12:24793337..24793361 (25 bp)
TACTGGCTGCTTGTTCGTCGCCGAT
LOC_Os12g40150
Target Sequence 
TGTACTAACACTCCAGAACCAGAACAACCATTCAAGCAAACAAAGAATTTACACATCAGCAGGGAGGAACCAGGTCAGAA
ACTGGCGTTTGAGACGCAGCTCTGCCATCACGGCCTCTGGAAGCAAGTCGAGCAGGCCGCCGTCGCGGAGGGCGAGCCAC
GGCAGCGGGAGGCGGCACACCGCGCGGAGGAGCGCCCGGGGCCGGAGAAGGCTCGATTCGCCGGGGCTCGTCCGGAGGCC
GCCGCCGGCGGTGGAAGCCGCGGCACGGCGCGGAGGATCCTCCGGTCGGCCTCTGGCTCCGCCACCCCGCTGCCGCCACA
CCACCTCCACATGCGGACGTTCCTAGCGGAAGCGCGTGCCTACTGGCTGCTTGTTCGTCGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis