Browse Element(s) Details


Os.53639.1.S1_at

Description gb:AK073690.1
DB_XREF= gi:32983713
TID=Os.53639.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055I24, full insert sequence.
FL= gb:AK073690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3765011/11Xyloglucan fucosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53639.1.S1_at--821--2212Chr09:8716783..8716902 (24 bp)
ACAAGAAGGTGCCTGACCCGCCGTG
NONE
Os.53639.1.S1_at--365--9951Chr04:22166644..22166668 (25 bp)
TACGACTGCCGGACGAGGGCCAAAG
LOC_Os04g37650
Os.53639.1.S1_at--532--5631Chr04:22166617..22166641 (25 bp)
GACACCGGCAAGATTGTCCGGCACA
LOC_Os04g37650
Os.53639.1.S1_at--913--8111Chr04:22166579..22166603 (25 bp)
GGACTTCGAGAATGGCGTTCAGTTA
LOC_Os04g37650
Os.53639.1.S1_at--784--5711Chr04:22166551..22166575 (25 bp)
GACTGAGCTTTGTTCCATTTTCTTG
LOC_Os04g37650
Os.53639.1.S1_at--395--3591Chr04:22166536..22166560 (25 bp)
CATTTTCTTGCCTAGTTGCCTGGAT
LOC_Os04g37650
Os.53639.1.S1_at--243--6291Chr04:22166514..22166538 (25 bp)
GATGTTCTCATGGTTCATTTCTGCT
LOC_Os04g37650
Os.53639.1.S1_at--65--3591Chr04:22166499..22166523 (25 bp)
CATTTCTGCTGAGTGTTTACATCTT
LOC_Os04g37650
Os.53639.1.S1_at--658--10051Chr04:22166392..22166416 (25 bp)
TAGTTGCCAAATGCCAACCGTGCGT
LOC_Os04g37650
Os.53639.1.S1_at--647--3991Chr04:22166374..22166398 (25 bp)
CGTGCGTTGCACTACAATTTCATTA
LOC_Os04g37650
Os.53639.1.S1_at--108--4191Chr04:22166314..22166338 (25 bp)
CCCTTTTTTCCCTTATCACATTGAG
LOC_Os04g37650
Target Sequence 
ACAAGAAGGTGCCTGACCCGCCGTGCCGGCTGGCCGCCACCATCGAGCCGTGCTTCCATAACCCACCAAACTACGACTGC
CGGACGAGGGCCAAAGGCGACACCGGCAAGATTGTCCGGCACATCCGGCACTGCGAGGACTTCGAGAATGGCGTTCAGTT
AGTGGACTGAGCTTTGTTCCATTTTCTTGCCTAGTTGCCTGGATGTTCTCATGGTTCATTTCTGCTGAGTGTTTACATCT
TACAGCAGTAAGAAAACTGAAAACTATAAACTGCTGTTATTATAGCGTATAAAGGTCGATAACATTTACTGAACTGTAAT
AAGTAGTTGCCAAATGCCAACCGTGCGTTGCACTACAATTTCATTATTAATGTTGTAAAAGAGGTTGTTTTTTTTAAGTT
GCCCTTTTTTCCCTTATCACATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis