Browse Element(s) Details


Os.1605.1.S1_at

Description gb:AB050884.1
DB_XREF= gi:13442815
GEN=OsABA2
TID=Os.1605.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1605 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin epoxidase, complete cds.
PROD=zeaxanthin epoxidase
FL= gb:AB050884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3761910/11Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0016123biological_processxanthophyll biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0009540molecular_functionzeaxanthin epoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1605.1.S1_at--858--8051Chr04:22156493..22156517 (25 bp)
GGAGACTCGCAACCCATTCGATTAA
LOC_Os04g37619
Os.1605.1.S1_at--31--2011Chr04:22156537..22156644 (25 bp)
ACTCTCCATTGGAAGCCGGTCAGAT
LOC_Os04g37619
Os.1605.1.S1_at--981--7811Chr04:22156637..22156661 (25 bp)
GGTCAGATCCCAGCAATTCGACTGC
LOC_Os04g37619
Os.1605.1.S1_at--1090--71Chr04:22156671..22156907 (25 bp)
ATTGCCCTTGCCACAGATATCAGAA
LOC_Os04g37619
Os.1605.1.S1_at--831--2891NONE
AAGGTAGACGCTATCGGCGTACCTC
NONE
Os.1605.1.S1_at--941--3531Chr04:22157127..22157151 (25 bp)
CATCCCTCGGATGCCATTGAGTTTG
LOC_Os04g37619
Os.1605.1.S1_at--759--3351Chr04:22157313..22157337 (25 bp)
CACGCTCCCATATGAATCTGCAAGA
LOC_Os04g37619
Os.1605.1.S1_at--444--971Chr04:22157337..22157361 (25 bp)
AGGAGGGCCGCAAATCCTGCAGGCA
LOC_Os04g37619
Os.1605.1.S1_at--1028--1351Chr04:22157371..22157395 (25 bp)
AGAGACTTCAGTCAGCCATGGCTGC
LOC_Os04g37619
Os.1605.1.S1_at--151--3011Chr04:22157455..22157479 (25 bp)
AATGCAGGTTCCACTTCCAGACAGG
LOC_Os04g37619
Os.1605.1.S1_at--359--9011Chr04:22157484..22157508 (25 bp)
TGAATAGCTTTCTCTGACGGATTGA
LOC_Os04g37619
Target Sequence 
GGAGACTCGCAACCCATTCGATTAATCAGGGATGAAAAAAAGTCACTCTCCATTGGAAGCCGGTCAGATCCCAGCAATTC
GACTGCTTCCCTGGCATTGCCCTTGCCACAGATATCAGAAAACCATGCTACTATCACATGCAAGAATAAGGCCTTTTATG
TGACTGATAATGGAAGTGAACATGGTACATGGATTACCGACAACGAAGGTAGACGCTATCGGCGTACCTCCGAACTTCCC
TGTCCGTTTCCATCCCTCGGATGCCATTGAGTTTGGTTCAGATAAAAAGGCCGTGTTCCGTGTGAAGGTGCTGAGCACGC
TCCCATATGAATCTGCAAGAGGAGGGCCGCAAATCCTGCAGGCAGCATGAACGAGAGACTTCAGTCAGCCATGGCTGCTG
TCATCACTCATCAGCTACTGTACAGCATCCAGTAAAACACAGTGAATTTTGCACTAAAATGCAGGTTCCACTTCCAGACA
GGATTTTGAATAGCTTTCTCTGACGGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis