Browse Element(s) Details


OsAffx.26364.1.S1_at

Description tigr:9632.m03530
TID=OsAffx.26364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3757011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26364.1.S1_at--788--6151Chr04:22135546..22135570 (25 bp)
GATGAGACGGGACCCGCGGTACCCG
LOC_Os04g37570
OsAffx.26364.1.S1_at--310--4091Chr04:22135720..22135744 (25 bp)
CGACGCGAACAGGTACGGAATGATC
LOC_Os04g37570
OsAffx.26364.1.S1_at--670--9931Chr04:22135733..22135757 (25 bp)
TACGGAATGATCATCGACATCGCGT
LOC_Os04g37570
OsAffx.26364.1.S1_at--1115--5271Chr04:22135737..22135761 (25 bp)
GAATGATCATCGACATCGCGTCGAC
LOC_Os04g37570
OsAffx.26364.1.S1_at--151--2091Chr04:22135749..22135773 (25 bp)
ACATCGCGTCGACGATCACGTTCCT
LOC_Os04g37570
OsAffx.26364.1.S1_at--784--9271Chr04:22135770..22135794 (25 bp)
TCCTGGAGGCATCGCTGTACGACGA
LOC_Os04g37570
OsAffx.26364.1.S1_at--848--8651Chr04:22135851..22135875 (25 bp)
TGGGCCTCGACCTGTGCTTCATCCT
LOC_Os04g37570
OsAffx.26364.1.S1_at--173--1911Chr04:22135932..22135956 (25 bp)
ACGGGAGGTGGCTCCGGCTGGACAA
LOC_Os04g37570
OsAffx.26364.1.S1_at--516--5891Chr04:22135984..22136008 (25 bp)
GAGCGGGATGATGTGCCTGATGGTG
LOC_Os04g37570
OsAffx.26364.1.S1_at--163--911Chr04:22136019..22136043 (25 bp)
AGGCGGGCAGCGTCTCCATCCTCGG
LOC_Os04g37570
OsAffx.26364.1.S1_at--715--9851Chr04:22136075..22136099 (25 bp)
TACAACCTTCGCCGCGGCAGGGTCA
LOC_Os04g37570
Target Sequence 
GATGAGACGGGACCCGCGGTACCCGTCCTACTACTACCTCAACCTCGACGGCCTGCTCATCGGCGACAGGGCGATGTCCC
TGCCGCCAACGACGACGACGACGGCGACGGCGACGGCGACGGCGCCGGCGCCGGCGCCGACGCCCTCCCCGAACGCGACG
GCGGTCGCCGTGGGCGACGCGAACAGGTACGGAATGATCATCGACATCGCGTCGACGATCACGTTCCTGGAGGCATCGCT
GTACGACGAGCTGGTGAACGACCTGGAGGTGGAGATCCGGCTGCCGCGCGGGACGGGGTCAAGCCTGGGCCTCGACCTGT
GCTTCATCCTGCCCGACGGCGTGGCGTTCGACCGGGTGTACGTGCCGGCGGTGGCGCTGGCGTTCGACGGGAGGTGGCTC
CGGCTGGACAAGGCGCGGCTGTTCGCGGAGGACAGGGAGAGCGGGATGATGTGCCTGATGGTGGGGAGGGCGGAGGCGGG
CAGCGTCTCCATCCTCGGCAACTTCCAGCAGCAGAACATGCAGGTGCTCTACAACCTTCGCCGCGGCAGGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis