Browse Element(s) Details


Os.53639.2.A1_at

Description gb:AK106286.1
DB_XREF= gi:32991495
TID=Os.53639.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A10, full insert sequence.
FL= gb:AK106286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3763011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53639.2.A1_at--771--9351Chr04:22167642..22167666 (25 bp)
TCGCAGAAGAGGTCCCTGAGGCCTT
LOC_Os04g37630
Os.53639.2.A1_at--666--7372Chr04:22167735..22167759 (25 bp)
GTGAGCATGCGGTTGCCGAGCCCCT
LOC_Os04g37630
Os.53639.2.A1_at--333--1612Chr04:22167762..22167786 (25 bp)
AGCGGCGTCCACACGAGGTACCTGC
LOC_Os04g37630
Os.53639.2.A1_at--622--991Chr04:22167999..22168023 (25 bp)
AGGAGGCCACCCAGGAGCCTGTCGT
LOC_Os04g37630
Os.53639.2.A1_at--1079--10771Chr04:22168067..22168091 (25 bp)
TTGTTGGCCGGACACTGCGCATGCA
LOC_Os04g37630
Os.53639.2.A1_at--688--9151Chr04:22168082..22168106 (25 bp)
TGCGCATGCAGGAACGGGAGAAAAT
LOC_Os04g37630
Os.53639.2.A1_at--407--2291Chr04:22168110..22168134 (25 bp)
AAATGCTTGGTCTCAGGCTCAGCTA
LOC_Os04g37630
Os.53639.2.A1_at--656--1571Chr04:22168130..22168154 (25 bp)
AGCTACTCAAATTACATCACGCGGT
LOC_Os04g37630
Os.53639.2.A1_at--1076--451Chr04:22168155..22168179 (25 bp)
ATCTCTGCCTTGTGCGTGCATGAAA
LOC_Os04g37630
Os.53639.2.A1_at--598--4991Chr04:22168172..22168196 (25 bp)
GCATGAAAATCTGCGTGCAACGTGT
LOC_Os04g37630
Os.53639.2.A1_at--743--9011Chr04:22168187..22168211 (25 bp)
TGCAACGTGTGCACACTTGGTGCTT
LOC_Os04g37630
Target Sequence 
TCGCAGAAGAGGTCCCTGAGGCCTTCGCCGGCGGGGTGGTGGAAGAGGAGGACGCGGTCGGTGAGGAGCGCATAGAGGAA
AGCCGACGTGAGCGTGAGCATGCGGTTGCCGAGCCCCTCGAGCGGCGTCCACACGAGGTACCTGCACTCGGCGTCGGAGG
TGTTCGACGGCGGCGGGGAGCGGAGGCGCTCCACGGCGCGCTCGTAGGCGGAGGTGCCGGGGCCGCAGCGGCGGTGGATG
GACTCGTAGCGTCGGAGTGAGGCGACCAGGTGCGGCGAGACAGCGTGGGGGGACTGCCGGCGGTAGAGCCCGGCGCGGTA
GCGGCTGAGGCAGGAGCTGTCGTCGAAGTCCGGCGAGAGGAGGCCACCCAGGAGCCTGTCGTTCCGCGGCTCCACCGCCG
CCGCGGCGGGATCGTCGCCGTCGCGTTGTTGGCCGGACACTGCGCATGCAGGAACGGGAGAAAATTAAAAATGCTTGGTC
TCAGGCTCAGCTACTCAAATTACATCACGCGGTATCTCTGCCTTGTGCGTGCATGAAAATCTGCGTGCAACGTGTGCACA
CTTGGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53639.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis