Browse Element(s) Details


Os.53650.1.S1_at

Description gb:AK073747.1
DB_XREF= gi:32983770
TID=Os.53650.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K18, full insert sequence.
FL= gb:AK073747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5092011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50910Os.48137.1.A1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.49175.1.S1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.24117.1.A1_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910OsAffx.31869.4.S1_x_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900Os.11409.1.S1_at11/116+30798420..30800415expressed protein
LOC_Os06g50900OsAffx.4432.1.S1_at1/116+30798420..30800415expressed protein
LOC_Os06g50900OsAffx.4432.1.S1_x_at1/116+30798420..30800415expressed protein
LOC_Os06g50920Os.53650.1.S1_at11/116+30816442..30822355protein kinase family protein, putative, expressed
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53650.1.S1_at--832--6571Chr06:30821576..30821600 (25 bp)
GATTCCTCACGAGTTTCTAACACCA
LOC_Os06g50920
Os.53650.1.S1_at--384--9791Chr06:30821841..30821865 (25 bp)
TAAGACCAGTTATTCCCAAGGCCAC
LOC_Os06g50920
Os.53650.1.S1_at--378--1291Chr06:30821866..30821890 (25 bp)
AGATCCTAAACTCGCGCTGTTACTT
LOC_Os06g50920
Os.53650.1.S1_at--737--6771Chr06:30821884..30821908 (25 bp)
GTTACTTGAGAGTTGCTGGCAGCAA
LOC_Os06g50920
Os.53650.1.S1_at--1057--9111Chr06:30821911..30821935 (25 bp)
TGCTGTCAACAGACCAGACTTTGTA
LOC_Os06g50920
Os.53650.1.S1_at--820--5931Chr06:30822063..30822086 (24 bp)
GAGCATGGCATTGATCTTACCCATC
LOC_Os06g50920
Os.53650.1.S1_at--389--6671Chr06:30822164..30822188 (25 bp)
GTTGCACATTGTTTTTCTGCAGCTA
LOC_Os06g50920
Os.53650.1.S1_at--53--5071Chr06:30822182..30822206 (25 bp)
GCAGCTACTTTCTCGATAGATTTCT
LOC_Os06g50920
Os.53650.1.S1_at--360--7511Chr06:30822248..30822272 (25 bp)
GTGGTAGCTGACTGGCAGATCACTT
LOC_Os06g50920
Os.53650.1.S1_at--560--2051Chr06:30822269..30822293 (25 bp)
ACTTAGCCGCCATTTGTCTTTTCCA
LOC_Os06g50920
Os.53650.1.S1_at--1012--6971Chr06:30822309..30822333 (25 bp)
GTACCCGTGTAATTTTCAATTGCTG
LOC_Os06g50920
Target Sequence 
GATTCCTCACGAGTTTCTAACACCACTCCAAGCAGCCATAGGTGTTGTTCAAGAGGGTTTAAGACCAGTTATTCCCAAGG
CCACAGATCCTAAACTCGCGCTGTTACTTGAGAGTTGCTGGCAGCAAAATGCTGTCAACAGACCAGACTTTGTACAAATT
TTGCAAAAGCTTGATGAAATTGCTGGGGAGCATGGCATTGATCTTACCCATCCCCATAAAGAGAAGGAGAAAGGAGGCTT
CTTTACTTTTGGGAAGGTCCATTGATGAAATTCTTGTATCATATCTAAAGTTGCACATTGTTTTTCTGCAGCTACTTTCT
CGATAGATTTCTCTGAAAGATACTGTGTATTCAGGGGTTTATTATTGTACAGTGTGGTAGCTGACTGGCAGATCACTTAG
CCGCCATTTGTCTTTTCCACCAAATGTAAAGCAAGTACCCGTGTAATTTTCAATTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis