Browse Element(s) Details


Os.53666.1.S1_s_at

Description gb:AK073829.1
DB_XREF= gi:32983852
TID=Os.53666.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068N07, full insert sequence.
FL= gb:AK073829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1728011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17230OsAffx.32056.1.S1_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.32056.1.S1_x_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.30536.1.S1_x_at1/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.1.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.3.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.4.S1_s_at8/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17250NANA6+9990834..9992306glucosyltransferase, putative
LOC_Os06g17260OsAffx.27683.1.S1_at10/116+9995898..9997325UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g17300OsAffx.4860.1.S1_at11/116+10022892..10023125hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53666.1.S1_s_at--599--8431Chr06:10005386..10005410 (25 bp)
GGCCATACGTGAGTTGAAGCTGCTC
LOC_Os06g17280
Os.53666.1.S1_s_at--653--4251Chr06:10005571..10005595 (25 bp)
CCTGTGGATTGGAACATTCACCATC
LOC_Os06g17280
Os.53666.1.S1_s_at--158--7931Chr06:10005576..10005600 (25 bp)
GGATTGGAACATTCACCATCGGTAG
LOC_Os06g17280
Os.53666.1.S1_s_at--1094--8511Chr06:10005580..10005604 (25 bp)
TGGAACATTCACCATCGGTAGCTCT
LOC_Os06g17280
Os.53666.1.S1_s_at--894--5471Chr06:10005582..10005606 (25 bp)
GAACATTCACCATCGGTAGCTCTTG
LOC_Os06g17280
Os.53666.1.S1_s_at--160--131Chr06:10005586..10005610 (25 bp)
ATTCACCATCGGTAGCTCTTGCACT
LOC_Os06g17280
Os.53666.1.S1_s_at--1070--8971Chr06:10005644..10005668 (25 bp)
TGAACCTCTCCCATCTCCAGATGTA
LOC_Os06g17280
Os.53666.1.S1_s_at--1147--171Chr06:10005676..10005700 (25 bp)
ATTTTTGCAGAGAATGCTTGTGTAA
LOC_Os06g17280
Os.53666.1.S1_s_at--368--5951Chr06:10005685..10005709 (25 bp)
GAGAATGCTTGTGTAATTTTGTAAA
LOC_Os06g17280
Os.53666.1.S1_s_at--395--8731Chr06:10005704..10005728 (25 bp)
TGTAAAAGAAGTCATCAGCTCATTG
LOC_Os06g17280
Os.53666.1.S1_s_at--807--5351Chr06:10005740..10005764 (25 bp)
GAAGATGGAGTGAACTGCTTCATCA
LOC_Os06g17280
Target Sequence 
GGCCATACGTGAGTTGAAGCTGCTCAATATAGACAAAACTTATGGTTCTGACACCTTCAAGGAAGTTGCTCGAGCAGCAA
CGCATACTGTTTTGGCCTCCTGTGGATTGGAACATTCACCATCGGTAGCTCTTGCACTCCCAAGACCGGTTTGCAAGCAC
ACCTGCAAAACTGAACCTCTCCCATCTCCAGATGTACTGACCGATTTTTGCAGAGAATGCTTGTGTAATTTTGTAAAAGA
AGTCATCAGCTCATTGNTGTCTGGCAGGAAGATGGAGTGAACTGCTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53666.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis