Browse Element(s) Details


Os.5376.1.S1_at

Description gb:AK071499.1
DB_XREF= gi:32981522
TID=Os.5376.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1567_G09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092A02, full insert sequence.
FL= gb:AK071499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0191011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5376.1.S1_at--993--4191Chr07:556524..556548 (25 bp)
CCCGCTTCAGCTCTTTCAATAGGAA
LOC_Os07g01910
Os.5376.1.S1_at--749--671Chr07:554828..554852 (25 bp)
ATGACCTAATGATCCGAACCGTGCG
LOC_Os07g01910
Os.5376.1.S1_at--826--111Chr07:554706..554729 (24 bp)
ATTCTTTTCTGGCTCGTCAGGAGAT
LOC_Os07g01910
Os.5376.1.S1_at--597--8491Chr07:554646..554670 (25 bp)
TGGCAGCGGTACTCACAGGGTATAG
LOC_Os07g01910
Os.5376.1.S1_at--532--9531Chr07:554593..554617 (25 bp)
TCTACTGTCGGATCTGAACCACCAA
LOC_Os07g01910
Os.5376.1.S1_at--408--5771Chr07:554541..554565 (25 bp)
GACGATTGTTTTTGCTCTTTACGGA
LOC_Os07g01910
Os.5376.1.S1_at--334--10831Chr07:554485..554509 (25 bp)
TTGTGCCTCAGAAACTCGCTTGTAA
LOC_Os07g01910
Os.5376.1.S1_at--91--7071Chr07:554430..554454 (25 bp)
GTAAGACAGGGCTTGGGCGACCAAT
LOC_Os07g01910
Os.5376.1.S1_at--801--10531Chr07:554365..554389 (25 bp)
TTCATGCTCTAGATAGGCTGCTGCT
LOC_Os07g01910
Os.5376.1.S1_at--353--911Chr07:554351..554375 (25 bp)
AGGCTGCTGCTGGTCGATAATCAAC
LOC_Os07g01910
Os.5376.1.S1_at--321--9711Chr07:554331..554355 (25 bp)
TCAACGGATGCTCTTTCTTTTTATA
LOC_Os07g01910
Target Sequence 
CCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATG
ATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCG
ATCATGGGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGAT
CTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGG
ATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGG
GCTTGGGCGACCAATCTTGCTCCGCCTTTTACAATCTCCAGCTGGTTTGGGGTGTTTCATGCTCTAGATAGGCTGCTGCT
GGTCGATAATCAACGGATGCTCTTTCTTTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis