Browse Element(s) Details


Os.53786.1.S1_at

Description gb:AK100020.1
DB_XREF= gi:32985229
TID=Os.53786.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145D03, full insert sequence.
FL= gb:AK100020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0954010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53786.1.S1_at--1136--6291Chr09:5149896..5149920 (25 bp)
GATGAAGCTCCCAAGGTAACCGGCA
LOC_Os09g09540
Os.53786.1.S1_at--539--7351Chr09:5149838..5149862 (25 bp)
GTGAAGGGATGTACCACAACTACAC
LOC_Os09g09540
Os.53786.1.S1_at--127--2831Chr09:5149800..5149824 (25 bp)
AAGTTGAGGCCCGATCTGCAGATAA
LOC_Os09g09540
Os.53786.1.S1_at--1123--2751Chr09:5149781..5149801 (21 bp)
AAGACTCGATGCTCTCAAGGCTAAA
LOC_Os09g09540
Os.53786.1.S1_at--354--5851Chr09:5149632..5149656 (25 bp)
GAGCCAAGTAGTCAAGATCACATCA
LOC_Os09g09540
Os.53786.1.S1_at--103--2651Chr09:5149598..5149622 (25 bp)
AACCAAGTTCATATCAGCCAATCAA
LOC_Os09g09540
Os.53786.1.S1_at--255--6151Chr09:5149373..5149397 (25 bp)
GAGGTCTAGGGCACACTTCCCTCAA
LOC_Os09g09540
Os.53786.1.S1_at--872--10631Chr09:5149357..5149381 (25 bp)
TTCCCTCAACCAATGGATCCCATAG
LOC_Os09g09540
Os.53786.1.S1_at--938--5951Chr09:5149333..5149357 (25 bp)
GAGAATTCATCCATGTGTTCCTCAG
LOC_Os09g09540
Os.53786.1.S1_at--1124--7411Chr09:5149319..5149343 (25 bp)
GTGTTCCTCAGTCGTTAATTATCTT
LOC_Os09g09540
Os.53786.1.S1_at--410--6811Chr09:5149258..5149282 (25 bp)
GTTTTCTGGTCAATGATCACCTTTC
NONE
Target Sequence 
GATGAAGCTCCCAAGGTAACCGGCAGAGCAAGAATGACAACCACAACATGTACTAATTGTGAAGGGATGTACCACAACTA
CACGACTTGCAAAAAAAAGTTGAGGCCCGATCTGCAGATAAGACTCGATGCTCTCAAGGCTAAAAGGTCGCATGAGCCAG
AAAACCAAGCTCAAAGATCACATGAGCCAAGTAGTCAAGATCACATCAATAATCATCAACCAAGTTCATATCAGCCAATC
AATGAAGGGGGAACAAGCAGGGGAAGGAAACTTGATTCAAGGAGGGGGTGTGCTATAGGAAGCACCATGAAGGAAAATGC
TAGAGGAACTACAGACAGGGGAAGAGAAAATGCTAGAGAAACTATAGTCAGGGGAAGAGGAAATGCTAGAGGAACTATAG
TCAAGGGAAGAGGAAATGCTAGAGGAACCACAGTTAGGGGAAGAGGTCTAGGGCACACTTCCCTCAACCAATGGATCCCA
TAGAGAATTCATCCATGTGTTCCTCAGTCGTTAATTATCTTTATTTAGTTGTTACCAAGGATTTTATTATGTGACTTGTT
TTCTGGTCAATGATCACCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis