Browse Element(s) Details


OsAffx.17616.1.S1_at

Description tigr:9637.m00708
TID=OsAffx.17616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0953011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17616.1.S1_at--285--1331Chr09:5144367..5144391 (25 bp)
AGAGGCAGCACCAACGGTGGGCACT
LOC_Os09g09530
OsAffx.17616.1.S1_at--1073--2371Chr09:5144330..5144354 (25 bp)
AAACGCAGCAGCGAGAGGGCCTCAT
LOC_Os09g09530
OsAffx.17616.1.S1_at--543--1091Chr09:5144315..5144339 (25 bp)
AGGGCCTCATCGAGCCAGATGGCAG
LOC_Os09g09530
OsAffx.17616.1.S1_at--806--511Chr09:5144307..5144331 (25 bp)
ATCGAGCCAGATGGCAGCACGCACG
LOC_Os09g09530
OsAffx.17616.1.S1_at--257--8171Chr09:5142898..5142917 (20 bp)
GGAACGGAGATTCAAATACCTCCAT
LOC_Os09g09530
OsAffx.17616.1.S1_at--131--3071Chr09:5142884..5142908 (25 bp)
AATACCTCCATAAATTCGACCAATA
LOC_Os09g09530
OsAffx.17616.1.S1_at--635--351Chr09:5142862..5142886 (25 bp)
ATAACGATTTCTGCTGGCCGGAGAC
LOC_Os09g09530
OsAffx.17616.1.S1_at--971--8051Chr09:5142843..5142867 (25 bp)
GGAGACCCAGCCGTTGACATATATA
LOC_Os09g09530
OsAffx.17616.1.S1_at--63--9791Chr09:5142820..5142844 (25 bp)
TAAGATTTACCAACAGGCGCTCCGT
LOC_Os09g09530
OsAffx.17616.1.S1_at--1022--891Chr09:5142806..5142830 (25 bp)
AGGCGCTCCGTTGATGTTTGCAAAT
LOC_Os09g09530
OsAffx.17616.1.S1_at--780--7551Chr09:5142772..5142796 (25 bp)
GGGCCTTGTCAAAAGATGGCCTTTT
LOC_Os09g09530
Target Sequence 
AGAGGCAGCACCAACGGTGGGCACTGGCGTGGAGAGAAAACGCAGCAGCGAGAGGGCCTCATCGAGCCAGATGGCAGCAC
GCACGAAAAACGGAACGGAGATTCAAATACCTCCATAAATTCGACCAATAACGATTTCTGCTGGCCGGAGACCCAGCCGT
TGACATATATAAGATTTACCAACAGGCGCTCCGTTGATGTTTGCAAATTTGATACGGGGGCCTTGTCAAAAGATGGCCTT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis