Browse Element(s) Details


OsAffx.29778.1.S1_at

Description tigr:9637.m00704
TID=OsAffx.29778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0950011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29778.1.S1_at--830--151Chr09:5120089..5120113 (25 bp)
ATTAGGCGACTTTGGGCTTGCACGA
LOC_Os09g09500
OsAffx.29778.1.S1_at--129--7851Chr09:5120052..5120076 (25 bp)
GGTACTGACCTACAGACTACACATG
LOC_Os09g09500
OsAffx.29778.1.S1_at--804--71Chr09:5119942..5119966 (25 bp)
ATTCCTTCTTGAGACCACTTGTGGA
LOC_Os09g09500
OsAffx.29778.1.S1_at--748--2711Chr09:5119857..5119881 (25 bp)
AAGCATTGGCATGATGGATCTCTCA
LOC_Os09g09500
OsAffx.29778.1.S1_at--993--6191Chr09:5119788..5119812 (25 bp)
GAGGCATGCCTAGTCCTAAAATTAG
LOC_Os09g09500
OsAffx.29778.1.S1_at--806--3611Chr09:5119761..5119785 (25 bp)
CTTGTGTGTTTGCATCCATTTCCTG
LOC_Os09g09500
OsAffx.29778.1.S1_at--552--2911Chr09:5119695..5119719 (25 bp)
AAGGACTTGCCACAGCCAGAGTTAG
LOC_Os09g09500
OsAffx.29778.1.S1_at--529--5051Chr09:5119671..5119695 (25 bp)
GCACCAACACGTCTAGGTTTCAGCA
LOC_Os09g09500
OsAffx.29778.1.S1_at--607--6831Chr09:5119655..5119679 (25 bp)
GTTTCAGCAAGCTACCTTTGATGCA
LOC_Os09g09500
OsAffx.29778.1.S1_at--61--2911Chr09:5119625..5119649 (25 bp)
AAGGATTTAACCCATCAGCCATGTC
LOC_Os09g09500
OsAffx.29778.1.S1_at--988--3371Chr09:5119610..5119634 (25 bp)
CAGCCATGTCATATCCGGAGTTTAG
LOC_Os09g09500
Target Sequence 
ATTAGGCGACTTTGGGCTTGCACGACTATATGATCATGGTACTGACCTACAGACTACACATGTGGTTAGGACCATGGGCT
ACCTAGCACCTGAGATGGTACAGACAGGTAAGGCATCCCCTCTCACAGATGTGTTTGCTTTTGGCGCATTCCTTCTTGAG
ACCACTTGTGGACAAAGGCCAGTGAAACAAAACTCTCAAGGCAACCAACTTATGCTGGTTGATTGGGTTCTTAAGCATTG
GCATGATGGATCTCTCACTGAGGCAGTGGACATGAGACTCCAAGGTGATTATAACATTGAAGAGGCATGCCTAGTCCTAA
AATTAGCTCTTGTGTGTTTGCATCCATTTCCTGCTTCAAGGCCAAATATGCGGCAGGTAATGCAATACCTCGACAAGGAC
TTGCCACAGCCAGAGTTAGCACCAACACGTCTAGGTTTCAGCAAGCTACCTTTGATGCAAAGCAAAGGATTTAACCCATC
AGCCATGTCATATCCGGAGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis