Browse Element(s) Details


Os.53643.1.S1_at

Description gb:AK073706.1
DB_XREF= gi:32983729
TID=Os.53643.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059G01, full insert sequence.
FL= gb:AK073706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0947011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09430OsAffx.31869.5.S1_x_at2/119+5073754..5075376retrotransposon protein, putative, unclassified
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53643.1.S1_at--929--3411Chr09:5094279..5094303 (25 bp)
CAGATCTCCCGAGTTGGGTTTACTT
LOC_Os09g09470
Os.53643.1.S1_at--694--10331Chr09:5094297..5094321 (25 bp)
TTTACTTTTGGCGTCGTTCGCGCGA
LOC_Os09g09470
Os.53643.1.S1_at--183--9931Chr09:5094367..5094391 (25 bp)
TACTGTCCGGGCGATTCGAGCTGAG
LOC_Os09g09470
Os.53643.1.S1_at--232--3872Chr09:5094407..5094431 (25 bp)
CTGTCTAATTGAGCGATGCCCCTGC
LOC_Os09g09470
Os.53643.1.S1_at--587--4191Chr09:5094426..5094450 (25 bp)
CCCTGCCGCGTTGTTATGAGATAGT
LOC_Os09g09470
Os.53643.1.S1_at--648--7931Chr09:5094460..5094484 (25 bp)
GGATTTATTTCCAGCATTGTGATCT
LOC_Os09g09470
Os.53643.1.S1_at--637--911Chr09:5094524..5094548 (25 bp)
AGGCTGAGAGTGTTGAACTGTCCCA
LOC_Os09g09470
Os.53643.1.S1_at--1011--8971Chr09:5094537..5094561 (25 bp)
TGAACTGTCCCAGTGGCTCGTCATT
LOC_Os09g09470
Os.53643.1.S1_at--1057--91Chr09:5094559..5094583 (25 bp)
ATTCTTCCCGAGCTCTGAAATTCTG
LOC_Os09g09470
Os.53643.1.S1_at--1075--4951Chr09:5094588..5094612 (25 bp)
GCATCTTCAGTTAGATACCGCGCTT
LOC_Os09g09470
Os.53643.1.S1_at--509--1271Chr09:5094600..5094624 (25 bp)
AGATACCGCGCTTATGTTTTCTGAT
LOC_Os09g09470
Target Sequence 
CAGATCTCCCGAGTTGGGTTTACTTTTGGCGTCGTTCGCGCGAGGATCTCTCGGTGGGCAGCCGGAGCCTCCCGGCCATG
GGGATCCGTACTGTCCGGGCGATTCGAGCTGAGGGTGTCCGCGCTCCCCTGTCTAATTGAGCGATGCCCCTGCCGCGTTG
TTATGAGATAGTGGCACGAGAGGATTTATTTCCAGCATTGTGATCTACTGGGTATTGTGGAGTGGGCTTGGCGCGGATAG
ACTGCAGGCTGAGAGTGTTGAACTGTCCCAGTGGCTCGTCATTCTTCCCGAGCTCTGAAATTCTGCATTGCATCTTCAGT
TAGATACCGCGCTTATGTTTTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis