Browse Element(s) Details


Os.9666.1.S1_at

Description gb:AK065728.1
DB_XREF= gi:32975746
TID=Os.9666.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036O11, full insert sequence.
FL= gb:AK061983.1 gb:AK065728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0948011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9666.1.S1_at--855--1291Chr09:5103848..5103872 (25 bp)
AGATGCTTTGTCAGCCCCTCTTGGA
LOC_Os09g09480
Os.9666.1.S1_at--687--4291Chr09:5103864..5103888 (25 bp)
CCTCTTGGAGCATCTGCTGATTTTG
LOC_Os09g09480
Os.9666.1.S1_at--85--5051Chr09:5104016..5104040 (25 bp)
GCAGAATTGGAATCTCAGCTTCTCG
LOC_Os09g09480
Os.9666.1.S1_at--356--4791Chr09:5104052..5104076 (25 bp)
GCTCCACCTGTGCATCCAGTGCAGG
LOC_Os09g09480
Os.9666.1.S1_at--1145--1011Chr09:5104074..5104098 (25 bp)
AGGTCCCAGGCACCAGGATACCAAC
LOC_Os09g09480
Os.9666.1.S1_at--347--4791Chr09:5104106..5104130 (25 bp)
GCTCCACAGAAAGCATCAGCTGAGG
LOC_Os09g09480
Os.9666.1.S1_at--280--4451Chr09:5104145..5104169 (25 bp)
GCCTTGCAAGCTGAAATGGCATTGT
LOC_Os09g09480
Os.9666.1.S1_at--874--2991Chr09:5105527..5105551 (25 bp)
AATGATTGGCTGTGCTCTACGGAAT
LOC_Os09g09480
Os.9666.1.S1_at--653--8211Chr09:5105547..5105571 (25 bp)
GGAATTTCAACGAGTCTAGCTACAA
LOC_Os09g09480
Os.9666.1.S1_at--322--7211Chr09:5105676..5105700 (25 bp)
GTCGTCTGTTTTCCATGCACATAAT
LOC_Os09g09480
Os.9666.1.S1_at--1036--3591Chr09:5105777..5105801 (25 bp)
CATTGACCATGAAGCCGTGTAAAAC
LOC_Os09g09480
Target Sequence 
AGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGG
GAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATA
CCAACTCGCCCTGCTCCACAGAAAGCATCAGCTGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATC
AGGTTCACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAAT
TTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGT
TTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCC
ATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis