Browse Element(s) Details


Os.53056.1.S1_x_at

Description gb:AK070630.1
DB_XREF= gi:32980654
TID=Os.53056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058P10, full insert sequence.
FL= gb:AK070630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0946011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09420Os.45976.1.S1_x_at4/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420Os.45976.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420OsAffx.17299.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09430OsAffx.31869.5.S1_x_at2/119+5073754..5075376retrotransposon protein, putative, unclassified
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53056.1.S1_x_at--638--8411Chr09:5089953..5089977 (25 bp)
GGCCGAGAACCCCAACGAGATGATC
LOC_Os09g09460
Os.53056.1.S1_x_at--700--711Chr09:5089934..5089958 (25 bp)
ATGATCGGCATCATCTACGGCGACG
LOC_Os09g09460
Os.53056.1.S1_x_at--110--2591Chr09:5089832..5089856 (25 bp)
AACGTGACGGTGATGGAGATCTCCA
LOC_Os09g09460
Os.53056.1.S1_x_at--914--8171Chr09:5089744..5089768 (25 bp)
GGAACGTGCCGCTCGACGTGTTCGT
LOC_Os09g09460
Os.53056.1.S1_x_at--655--8891Chr09:5089672..5089696 (25 bp)
TGAGGGTCAACGTGCACTGCGCGCT
LOC_Os09g09460
Os.53056.1.S1_x_at--127--9371Chr09:5089642..5089666 (25 bp)
TCGACAGCATCTCACCCAAGAAGAA
LOC_Os09g09460
Os.53056.1.S1_x_at--587--3451Chr09:5089592..5089616 (25 bp)
CAGGGCAACGTAGAGTTCTGATCCA
LOC_Os09g09460
Os.53056.1.S1_x_at--172--1231Chr09:5089579..5089603 (25 bp)
AGTTCTGATCCATTGCATGCATCGA
LOC_Os09g09460
Os.53056.1.S1_x_at--600--631Chr09:5089563..5089587 (25 bp)
ATGCATCGAACATCAATGCCTTCAT
LOC_Os09g09460
Os.53056.1.S1_x_at--830--131Chr09:5089506..5089530 (25 bp)
ATTAACTTTGCTGTTCAGTGGAGTT
LOC_Os09g09460
Os.53056.1.S1_x_at--291--5051Chr09:5089402..5089426 (25 bp)
GCAGAATGCAGAGACATCTTTTGAT
LOC_Os09g09460
Target Sequence 
GGCCGAGAACCCCAACGAGATGATCGGCATCATCTACGGCGACGGCTCCCGAACGGTCGTCTCCTACCGCGGCACGCCGC
TGTGCTCCGGCCACCTCCCCACCTTCTACCAGGGGTTCAAGAACGTGACGGTGATGGAGATCTCCATGGAAGGGAGGCAC
GGCTTCGGGTCGGGGCTGCAGAGCGCGCTGGAGGAGAGCGAGAAGGAAGGGAACGTGCCGCTCGACGTGTTCGTCAGCGT
GCCCGTGTCGCTGCGGTTCGGCTCGTTCGACGTCCGGGAGGTGAGGGTCAACGTGCACTGCGCGCTCGTCGTCGACAGCA
TCTCACCCAAGAAGAAGCCCACCATCAAGTCCGCCACCTACCAGGGCAACGTAGAGTTCTGATCCATTGCATGCATCGAA
CATCAATGCCTTCATTAATTTCATTTAATTGTTTGTTTTAATTTGTTATTAACTTTGCTGTTCAGTGGAGTTGGGGAGAA
AGTATGTTTGTGATGTAAACACTGTAGTAAGAAATGGTTCCAAACTAAAATTCCTTTGGTTGAAGTTATATGCAGAATGC
AGAGACATCTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis