Browse Element(s) Details


Os.24667.1.S1_at

Description gb:AK121740.1
DB_XREF= gi:37991363
TID=Os.24667.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085H13, full insert sequence.
FL= gb:AK121740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0947011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09430OsAffx.31869.5.S1_x_at2/119+5073754..5075376retrotransposon protein, putative, unclassified
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24667.1.S1_at--543--6451Chr09:5100433..5100457 (25 bp)
GATCAACAGGGAGCTTCATCCTTCT
LOC_Os09g09470
Os.24667.1.S1_at--683--571Chr09:5100450..5100474 (25 bp)
ATCCTTCTCACTTCAGTATGTGCAG
LOC_Os09g09470
Os.24667.1.S1_at--76--6291Chr09:5100477..5100501 (25 bp)
GATGCTTGAAGAATCCCTAGGGTCT
LOC_Os09g09470
Os.24667.1.S1_at--323--7691Chr09:5100496..5100520 (25 bp)
GGGTCTGTTCAGAAGTCCATCCATG
LOC_Os09g09470
Os.24667.1.S1_at--684--5571Chr09:5100530..5100554 (25 bp)
GAAATCTGCACATCGAACTTCTAAG
LOC_Os09g09470
Os.24667.1.S1_at--904--5051Chr09:5101300..5101324 (25 bp)
GCAGCAGCTCCTCTAATCTGTATAT
LOC_Os09g09470
Os.24667.1.S1_at--580--1211Chr09:5101338..5101362 (25 bp)
AGTTTTGACATTGCTGTGCTTCGCT
LOC_Os09g09470
Os.24667.1.S1_at--107--2971Chr09:5101372..5101396 (25 bp)
AATGGCTACAATCCCCGACTGATAT
LOC_Os09g09470
Os.24667.1.S1_at--1120--7911Chr09:5101451..5101475 (25 bp)
GGTTGTACATAGCATCCCTATTCAG
LOC_Os09g09470
Os.24667.1.S1_at--1054--11Chr09:5101567..5101591 (25 bp)
ATTGGATGCAGTCTTGTTCGTGTCT
LOC_Os09g09470
Os.24667.1.S1_at--779--9491Chr09:5101589..5101613 (25 bp)
TCTGCCTGGCCTATGTGGAATGCTA
LOC_Os09g09470
Target Sequence 
GATCAACAGGGAGCTTCATCCTTCTCACTTCAGTATGTGCAGCGGATGCTTGAAGAATCCCTAGGGTCTGTTCAGAAGTC
CATCCATGAGGACGTGAGAAATCTGCACATCGAACTTCTAAGACAGTTTCACATGCAAGAGATGGAAATGTCGGGCGTGT
TGANCCTGGTCTTAGAGAAGTTGGAAGGCCTTACAAAGGAAGTGCAGCAGCTAAGAAGGGAGAACCANCAGCTCCGGCAG
CAGCTCCTCTAATCTGTATATTCTTTTAGGGGTTAGTTTTGACATTGCTGTGCTTCGCTGGAGCGTACAATGGCTACAAT
CCCCGACTGATATTTGATTATCTGTTTGTCTAGTTGGGTTGGCGAATAGGAAATCCATGTTTGACACGGTTGTACATAGC
ATCCCTATTCAGTCTAGGAGCATATTGATTAATTTGACCTGTTTGATACTTTGATCAGATTGTTTTATTCNTTTTTTCCC
TTTTTGTTGTGCCATGTTTGGACATTGGATGCAGTCTTGTTCGTGTCTGCCTGGCCTATGTGGAATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis