Browse Element(s) Details


OsAffx.17614.1.S1_at

Description tigr:9637.m00703
TID=OsAffx.17614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0949011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17614.1.S1_at--44--10091Chr09:5111347..5111371 (25 bp)
TAGGTTGGGTATAGTCTCACATGGT
LOC_Os09g09490
OsAffx.17614.1.S1_at--1101--9871Chr09:5111382..5111406 (25 bp)
TACTTGATCTACAACATTTGGGCCA
LOC_Os09g09490
OsAffx.17614.1.S1_at--86--2071Chr09:5111395..5111419 (25 bp)
ACATTTGGGCCATGTTCCAGATTTG
LOC_Os09g09490
OsAffx.17614.1.S1_at--661--8511Chr09:5111418..5111442 (25 bp)
TGGAATGGCTGCACCTACGAGGGAA
LOC_Os09g09490
OsAffx.17614.1.S1_at--875--5931Chr09:5111451..5111475 (25 bp)
GAGCAGGTGCTACATCAAATTTGCA
LOC_Os09g09490
OsAffx.17614.1.S1_at--719--8591Chr09:5111510..5111534 (25 bp)
TGGTCCAGGTTGCAGGTTGATCCTC
LOC_Os09g09490
OsAffx.17614.1.S1_at--5--3651Chr09:5111534..5111558 (25 bp)
CTTCCTGCAATCTCACATTTGTCGA
LOC_Os09g09490
OsAffx.17614.1.S1_at--539--7111Chr09:5111554..5111578 (25 bp)
GTCGAACCTAGCAGAACTTTACCTT
LOC_Os09g09490
OsAffx.17614.1.S1_at--535--10791Chr09:5111597..5111621 (25 bp)
TTGTTGATGACCTTTCAGGCTGGCT
LOC_Os09g09490
OsAffx.17614.1.S1_at--115--5671Chr09:5111654..5111678 (25 bp)
GACATGGACCAGTTACGTTCAATTG
LOC_Os09g09490
OsAffx.17614.1.S1_at--469--2011Chr09:5111776..5111800 (25 bp)
ACTACAAATTTTACGCCTCTGGGAT
LOC_Os09g09490
Target Sequence 
TAGGTTGGGTATAGTCTCACATGGTGAGGATGAAATACTTGATCTACAACATTTGGGCCATGTTCCAGATTTGGAATGGC
TGCACCTACGAGGGAAGTTACATGGAGCAGGTGCTACATCAAATTTGCAGAATTTCAGTAAATTAAGATACCTAAGCATA
GGGTGGTCCAGGTTGCAGGTTGATCCTCTTCCTGCAATCTCACATTTGTCGAACCTAGCAGAACTTTACCTTCAGAAAGC
CTATGATGGTTTGTTGATGACCTTTCAGGCTGGCTGGTTTCCAAATCTTAGGGAATTGGGTTTAGCTGACATGGACCAGT
TACGTTCAATTGATATTGAAGCTGGCACAATGCCAAACTTGAGCATTTTGGTATTATGTGGGCTGCAGAATATGATATCT
GTGCCAGTAGGATTTAAATATCTGACATCACTACAAATTTTACGCCTCTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis