Browse Element(s) Details


Os.27228.1.S1_at

Description gb:AK067908.1
DB_XREF= gi:32977926
TID=Os.27228.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126N07, full insert sequence.
FL= gb:AK067908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0952011/11Hexose carrier protein HEX6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein
LOC_Os09g09500OsAffx.29778.1.S1_at11/119+5119567..5121573Protein kinase domain containing protein
LOC_Os09g09510OsAffx.17615.1.S1_at11/119+5124150..5126327Lectin receptor-type protein kinase, putative
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27228.1.S1_at--805--8471Chr09:5140889..5140913 (25 bp)
TGGCGCAGTTGTTCCTGGCCACGCT
LOC_Os09g09520
Os.27228.1.S1_at--383--9951Chr09:5141009..5141033 (25 bp)
TACCCATCGAGCAGGTCCGGAGGCT
LOC_Os09g09520
Os.27228.1.S1_at--955--4831Chr09:5141092..5141116 (25 bp)
GCTAAGCTAGACTGCTAGCGCCAGT
LOC_Os09g09520
Os.27228.1.S1_at--1161--4851Chr09:5141105..5141129 (25 bp)
GCTAGCGCCAGTAACTTTGACAACT
LOC_Os09g09520
Os.27228.1.S1_at--1046--2511Chr09:5141117..5141141 (25 bp)
AACTTTGACAACTCTGCACAATCGA
LOC_Os09g09520
Os.27228.1.S1_at--156--5131Chr09:5141132..5141156 (25 bp)
GCACAATCGATCACAGTTAACTAGT
LOC_Os09g09520
Os.27228.1.S1_at--61--10071Chr09:5141153..5141177 (25 bp)
TAGTCAATAGTTACTACTCCCTCCG
LOC_Os09g09520
Os.27228.1.S1_at--172--10431Chr09:5141180..5141204 (25 bp)
TTAGGCTACGATATGTTTCAAAGTC
LOC_Os09g09520
Os.27228.1.S1_at--603--5391Chr09:5141247..5141271 (25 bp)
GAAGCAGCTTGTTAGTAGACAGGTT
LOC_Os09g09520
Os.27228.1.S1_at--920--10031Chr09:5141259..5141283 (25 bp)
TAGTAGACAGGTTTCCCAACTTTTG
LOC_Os09g09520
Os.27228.1.S1_at--935--9311Chr09:5141272..5141296 (25 bp)
TCCCAACTTTTGTCTTTTAGTTCAT
LOC_Os09g09520
Target Sequence 
TGGCGCAGTTGTTCCTGGCCACGCTGTGCCGCATGAGGGCCGGCATCTTCTTCTTCTTCGCGGCGTGGCTGGTGGCCATG
ACCGCCTTCGTCTACCTCCTGCTGCCGGAGACCAAGGGCCTACCCATCGAGCAGGTCCGGAGGCTGTGGGCGCAGCACTG
GTTCTGGAGGAGGTTCGTCGACACCGCCTCCAACGGGGAGCAAGCTAAGCTAGACTGCTAGCGCCAGTAACTTTGACAAC
TCTGCACAATCGATCACAGTTAACTAGTCAATAGTTACTACTCCCTCCGTTTTAGGCTACGATATGTTTCAAAGTCAAAA
TGTTTTAAGGGTCTGTTTAGGGGAGCTTTTGGTTCTGAGAAGCAGCTTGTTAGTAGACAGGTTTCCCAACTTTTGTCTTT
TAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis