Browse Element(s) Details


Os.53790.1.S1_at

Description gb:AK100074.1
DB_XREF= gi:32985283
TID=Os.53790.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170E11, full insert sequence.
FL= gb:AK100074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0730010/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53790.1.S1_at--415--3751NONE
CTCACCGCAGGTATATATTGCTCTG
NONE
Os.53790.1.S1_at--770--72Chr11:26099641..26099661 (21 bp)
ATTGCTCTGACCATGCATGCAAGGA
NONE
Os.53790.1.S1_at--598--7991Chr08:4082202..4082226 (25 bp)
GGATGATCAGGATGAACGCTTACAT
LOC_Os08g07300
Os.53790.1.S1_at--365--8791Chr08:4082231..4082255 (25 bp)
TGATACACATGTGTGGTCCCCGGCA
LOC_Os08g07300
Os.53790.1.S1_at--1137--8571Chr08:4082244..4082268 (25 bp)
TGGTCCCCGGCACAGAAGAGCTGAT
LOC_Os08g07300
Os.53790.1.S1_at--1047--2551Chr08:4082305..4082329 (25 bp)
AACTGTTGTCAGTTGTGACGAACAA
LOC_Os08g07300
Os.53790.1.S1_at--274--10871Chr08:4082331..4082355 (25 bp)
TTGGCTATAAATTGTGGTCTCATGC
LOC_Os08g07300
Os.53790.1.S1_at--800--7491Chr08:4082344..4082368 (25 bp)
GTGGTCTCATGCCATTATTGATCCC
LOC_Os08g07300
Os.53790.1.S1_at--54--6871Chr08:4082384..4082408 (25 bp)
GTTTGTGTACTGTTGACTCGATCCA
LOC_Os08g07300
Os.53790.1.S1_at--377--5711Chr08:4082398..4082422 (25 bp)
GACTCGATCCAACGACTAACTTTTT
LOC_Os08g07300
Os.53790.1.S1_at--1153--1871Chr08:4082493..4082517 (25 bp)
ACGTCATTTGACAGCAGGGTAAACA
LOC_Os08g07300
Target Sequence 
CTCACCGCAGGTATATATTGCTCTGACCATGCATGCAAGGATGATCAGGATGAACGCTTACATGAGATGATACACATGTG
TGGTCCCCGGCACAGAAGAGCTGATGAGCATTAATCAAACTTTGAGATCTTAGGGATGATAAACTGTTGTCAGTTGTGAC
GAACAATTTGGCTATAAATTGTGGTCTCATGCCATTATTGATCCCCCTGAANGTTGTTATGTTTGTGTACTGTTGACTCG
ATCCAACGACTAACTTTTTTTATCTCCATGACATTTACATGTGTCAAAACNCATAGNGTGGTTAAATTTGTATATATTTA
CAAACTTGTAAACGTCATTTGACAGCAGGGTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis