Browse Element(s) Details


Os.57432.1.S1_a_at

Description gb:AK121518.1
DB_XREF= gi:37991141
TID=Os.57432.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23272 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027G17, full insert sequence.
FL= gb:AK121518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0729011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57432.1.S1_a_at--678--10211Chr08:4064034..4064058 (25 bp)
TATTCAGAAGCTTTTGCAGTCCAAA
LOC_Os08g07290
Os.57432.1.S1_a_at--1091--5331Chr08:4063988..4064012 (25 bp)
GAAGTTGAACTGTTCTTGCAGAACT
LOC_Os08g07290
Os.57432.1.S1_a_at--719--8551Chr08:4063964..4063988 (25 bp)
TGGAGGGAGAGCTTTCTGCACCAGC
LOC_Os08g07290
Os.57432.1.S1_a_at--445--5131Chr08:4063844..4063868 (25 bp)
GCAAATCTGCTTGGCCTATATGCAC
LOC_Os08g07290
Os.57432.1.S1_a_at--311--271Chr08:4063827..4063851 (25 bp)
ATATGCACTTGCTCAGTCACAATCT
LOC_Os08g07290
Os.57432.1.S1_a_at--543--2231Chr08:4063809..4063833 (25 bp)
ACAATCTTTGGAACAGCTGAAGGAC
LOC_Os08g07290
Os.57432.1.S1_a_at--1113--5351Chr08:4063767..4063791 (25 bp)
GAAGAACTTTTCAGACCTTGATGGG
LOC_Os08g07290
Os.57432.1.S1_a_at--628--7871Chr08:4063743..4063767 (25 bp)
GGTTATCACACCATTCCTAAAAAAT
LOC_Os08g07290
Os.57432.1.S1_a_at--693--10751Chr08:4063715..4063739 (25 bp)
TTGATCTCTAACCTTTATTCGTTGG
LOC_Os08g07290
Os.57432.1.S1_a_at--348--2171Chr08:4063680..4063704 (25 bp)
ACACGAGACGTTCAATTCCCCAAAG
LOC_Os08g07290
Os.57432.1.S1_a_at--721--7951Chr08:4063647..4063671 (25 bp)
GGATCAAGTAGGGAGTTCAGCAACT
LOC_Os08g07290
Target Sequence 
TATTCAGAAGCTTTTGCAGTCCAAATATCTGGTGGAAACAGGAGCAGAAGTTGAACTGTTCTTGCAGAACTGGAGGGAGA
GCTTTCTGCACCAGCTCATATCACNGANCAGCAGCTTTCTCGAGAAAGAAGGGAAAACTGATTGGATTGGTGGTATAGGA
AACCATAAGGATGTGTTCATATCAGTTTATGCAAATCTGCTTGGCCTATATGCACTTGCTCAGTCACAATCTTTGGAACA
GCTGAAGGACAGACACACAGAATATTTGAAGAACTTTTCAGACCTTGATGGGGTTATCACACCATTCCTAAAAAATCCTT
TGATCTCTAACCTTTATTCGTTGGTAAAAGAATCACACGAGACGTTCAATTCCCCAAAGAAGCAATGGGATCAAGTAGGG
AGTTCAGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57432.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis