Browse Element(s) Details


OsAffx.16871.1.S1_at

Description tigr:9636.m00660
TID=OsAffx.16871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0725011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07220NANA8+4017330..4022355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07230NANA8+4023033..4025974retrotransposon protein, putative, unclassified
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16871.1.S1_at--968--7071Chr08:4043699..4043723 (25 bp)
GTCAATCCTCTCCTAGCTTTGGAAG
LOC_Os08g07250
OsAffx.16871.1.S1_at--94--7711Chr08:4043744..4043768 (25 bp)
GGTGCGAAAGGGATGATAAAAGTTA
LOC_Os08g07250
OsAffx.16871.1.S1_at--729--1211Chr08:4043764..4043788 (25 bp)
AGTTAGTGGCTATGAGACGATGGTT
LOC_Os08g07250
OsAffx.16871.1.S1_at--273--8491Chr08:4043770..4043794 (25 bp)
TGGCTATGAGACGATGGTTGGCTAT
LOC_Os08g07250
OsAffx.16871.1.S1_at--886--3691Chr08:4043773..4043797 (25 bp)
CTATGAGACGATGGTTGGCTATGAC
LOC_Os08g07250
OsAffx.16871.1.S1_at--41--7931Chr08:4043785..4043809 (25 bp)
GGTTGGCTATGACTATGATACACGC
LOC_Os08g07250
OsAffx.16871.1.S1_at--628--10871Chr08:4043787..4043811 (25 bp)
TTGGCTATGACTATGATACACGCGT
LOC_Os08g07250
OsAffx.16871.1.S1_at--36--8311Chr08:4043789..4043813 (25 bp)
GGCTATGACTATGATACACGCGTTG
LOC_Os08g07250
OsAffx.16871.1.S1_at--569--10131Chr08:4043792..4043816 (25 bp)
TATGACTATGATACACGCGTTGCCG
LOC_Os08g07250
OsAffx.16871.1.S1_at--1006--671Chr08:4043793..4043817 (25 bp)
ATGACTATGATACACGCGTTGCCGT
LOC_Os08g07250
OsAffx.16871.1.S1_at--219--8951Chr08:4043794..4043818 (25 bp)
TGACTATGATACACGCGTTGCCGTT
LOC_Os08g07250
Target Sequence 
GTCAATCCTCTCCTAGCTTTGGAAGAGTGGGGGCCGGGGACAGAGGGTGCGAAAGGGATGATAAAAGTTAGTGGCTATGA
GACGATGGTTGGCTATGACTATGATACACGCGTTGCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis