Browse Element(s) Details


OsAffx.29075.1.S1_at

Description tigr:9636.m00659
TID=OsAffx.29075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0724011/11hypothetical protein
LOC_Os03g377907/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07170NANA8+4005027..4006931Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07180NANA8+4007771..4008304Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07189NANA8+4009918..4010018NA
LOC_Os08g07200OsAffx.16870.1.S1_x_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200OsAffx.16870.1.S1_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_x_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07210OsAffx.5733.1.S1_at11/118+4014636..4015495hypothetical protein
LOC_Os08g07220NANA8+4017330..4022355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07230NANA8+4023033..4025974retrotransposon protein, putative, unclassified
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29075.1.S1_at--316--10617Chr11:2147038..2147062 (25 bp)
TTCTGTTTCTTCTCCCGAGCAACAA
NONE
OsAffx.29075.1.S1_at--234--10318Chr11:2147043..2147067 (25 bp)
TTTCTTCTCCCGAGCAACAACAGAG
NONE
OsAffx.29075.1.S1_at--767--10596Chr07:11716227..11716251 (25 bp)
TTCTCCCGAGCAACAACAGAGAGGA
NONE
OsAffx.29075.1.S1_at--812--9055Chr03:20909253..20909277 (25 bp)
TGCTTCGGTGGTTGAACGGCCTCGA
LOC_Os03g37790
OsAffx.29075.1.S1_at--836--3615Chr03:20909255..20909279 (25 bp)
CTTCGGTGGTTGAACGGCCTCGACG
LOC_Os03g37790
OsAffx.29075.1.S1_at--776--4132Chr08:4032577..4032601 (25 bp)
CGCTCGCTGCGCATCCGGGAAGGTC
LOC_Os08g07240
OsAffx.29075.1.S1_at--940--2572Chr08:4032518..4032542 (25 bp)
AACGGCAACAACAAGAGCTCAGCTC
LOC_Os08g07240
OsAffx.29075.1.S1_at--827--5236Chr05:12542865..12542981 (25 bp)
GAAGCAAATAGGACTTTAGCCCCAA
NONE
OsAffx.29075.1.S1_at--328--3296Chr05:12542962..12542981 (20 bp)
CAAATAGGACTTTAGCCCCAAGGAT
NONE
OsAffx.29075.1.S1_at--34--8133Chr01:16555360..16555379 (20 bp)
GGACTTTAGCCCCAAGGATAAAATG
NONE
OsAffx.29075.1.S1_at--303--8313Chr08:13337905..13337929 (24 bp)
TAGCCCCAAGGATAAAATGGTTAAG
NONE
Target Sequence 
TTCTGTTTCTTCTCCCGAGCAACAACAGAGAGGAAGAGGAGCAGGGCGCCGGTGCTTCGGTGGTTGAACGGCCTCGACGG
CGGCGGCCAAGCGTGTTCCCGCTCGCTGCGCATCCGGGAAGGTCGGTGGAAGACATAGGGAGAAAAGAGGATGGCCGGAA
CGGCAACAACAAGAGCTCAGCTCCGGCCGGCTATGGTGGTGCCGGTGGTGGCTGGTGGAAGTGGCTAAAGGAGAGGGATG
GTGGCAAAATAGATGGAAGGGAAGCAAATAGGACTTTAGCCCCAAGGATAAAATGGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis