Browse Element(s) Details


OsAffx.5733.1.S1_at

Description tigr:9636.m00656
TID=OsAffx.5733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0721011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07130NANA8+3985008..3991163transposon protein, putative, unclassified
LOC_Os08g07140NANA8+3991805..3995041transposon protein, putative, unclassified
LOC_Os08g07150OsAffx.29073.1.S1_x_at11/118+3997993..3998311hypothetical protein
LOC_Os08g07160OsAffx.16869.1.S1_at11/118+3999072..3999344hypothetical protein
LOC_Os08g07170NANA8+4005027..4006931Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07180NANA8+4007771..4008304Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07189NANA8+4009918..4010018NA
LOC_Os08g07200OsAffx.16870.1.S1_x_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200OsAffx.16870.1.S1_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_x_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07210OsAffx.5733.1.S1_at11/118+4014636..4015495hypothetical protein
LOC_Os08g07220NANA8+4017330..4022355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07230NANA8+4023033..4025974retrotransposon protein, putative, unclassified
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5733.1.S1_at--555--3751Chr08:4015441..4015465 (25 bp)
CTCTTTCGAGATGAAGGCTACAACG
LOC_Os08g07210
OsAffx.5733.1.S1_at--892--5291Chr08:4015429..4015453 (25 bp)
GAAGGCTACAACGATTTGACTGCAA
LOC_Os08g07210
OsAffx.5733.1.S1_at--313--3251Chr08:4015421..4015445 (25 bp)
CAACGATTTGACTGCAAGTCTGCAA
LOC_Os08g07210
OsAffx.5733.1.S1_at--1069--9011Chr08:4015409..4015433 (25 bp)
TGCAAGTCTGCAACAAACGCCATTG
LOC_Os08g07210
OsAffx.5733.1.S1_at--1111--5131Chr08:4015400..4015424 (25 bp)
GCAACAAACGCCATTGTTCCGTGAA
LOC_Os08g07210
OsAffx.5733.1.S1_at--1053--2371Chr08:4015395..4015419 (25 bp)
AAACGCCATTGTTCCGTGAAGTCTA
LOC_Os08g07210
OsAffx.5733.1.S1_at--241--4171Chr08:4015392..4015416 (25 bp)
CGCCATTGTTCCGTGAAGTCTACAT
LOC_Os08g07210
OsAffx.5733.1.S1_at--58--3611Chr08:4015389..4015413 (25 bp)
CATTGTTCCGTGAAGTCTACATCAA
LOC_Os08g07210
OsAffx.5733.1.S1_at--91--2851Chr08:4015377..4015401 (25 bp)
AAGTCTACATCAAAGCAGATTTGGT
LOC_Os08g07210
OsAffx.5733.1.S1_at--450--3431Chr08:4015254..4015386 (25 bp)
CAGATTTGGTTCAGAAATTTGGTGC
LOC_Os08g07210
OsAffx.5733.1.S1_at--935--2931Chr08:4014673..4014696 (24 bp)
AAGGCTTATTGGAATCGGAGGCGAA
LOC_Os08g07210
Target Sequence 
CTCTTTCGAGATGAAGGCTACAACGATTTGACTGCAAGTCTGCAACAAACGCCATTGTTCCGTGAAGTCTACATCAAAGC
AGATTTGGTTCAGAAATTTGGTGCAGAAAAAGAAGGCTTATTGGAATCGGAGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis