Browse Element(s) Details


Os.53796.1.S1_at

Description gb:AK100104.1
DB_XREF= gi:32985313
TID=Os.53796.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004L16, full insert sequence.
FL= gb:AK100104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3376011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein
LOC_Os04g33770OsAffx.26312.1.S1_at11/114+20259479..20265096hypothetical protein
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53796.1.S1_at--756--7791Chr04:20256816..20256840 (25 bp)
GGTCGCACGCTCAAAGGCCGTGACC
LOC_Os04g33760
Os.53796.1.S1_at--371--8231Chr04:20256868..20256892 (25 bp)
GGCAAACCGGTTTCCTCGACTGAAT
LOC_Os04g33760
Os.53796.1.S1_at--27--6831Chr04:20256877..20256901 (25 bp)
GTTTCCTCGACTGAATTCCGCAAAG
LOC_Os04g33760
Os.53796.1.S1_at--817--791Chr04:20256905..20256929 (25 bp)
ATGTGGCTCTGGCTTTTTGTTCAGG
LOC_Os04g33760
Os.53796.1.S1_at--584--8491Chr04:20256914..20256938 (25 bp)
TGGCTTTTTGTTCAGGTCCGCATGC
LOC_Os04g33760
Os.53796.1.S1_at--103--1031Chr04:20256927..20256951 (25 bp)
AGGTCCGCATGCTCAGTGTCGTAGA
LOC_Os04g33760
Os.53796.1.S1_at--189--4831Chr04:20256937..20256961 (25 bp)
GCTCAGTGTCGTAGATCGGTTACAT
LOC_Os04g33760
Os.53796.1.S1_at--240--5151Chr04:20257051..20257075 (25 bp)
GCAACTGCTTGCAATTTTGGTGCCC
LOC_Os04g33760
Os.53796.1.S1_at--163--10731Chr04:20257059..20257083 (25 bp)
TTGCAATTTTGGTGCCCTTGGAGGT
LOC_Os04g33760
Os.53796.1.S1_at--154--2991Chr04:20257134..20257158 (25 bp)
AATGAGAACTGGTGTCCTGCGTTTG
LOC_Os04g33760
Os.53796.1.S1_at--47--4651Chr04:20257152..20257176 (25 bp)
GCGTTTGGGAGCTCTCTGTAATTCA
LOC_Os04g33760
Target Sequence 
GGTCGCACGCTCAAAGGCCGTGACCTGCGGCGGGTGCGCGACGCCGTGCTCCGGCAAACCGGTTTCCTCGACTGAATTCC
GCAAAGGTGATGTGGCTCTGGCTTTTTGTTCAGGTCCGCATGCTCAGTGTCGTAGATCGGTTACATTTTAGGGTATAATT
CTAGTGGGTTATTGGTGTAGATCGAGAAGTAAAACCAGATGGTAAGGCAACAAATTGAGTTGGTTTTTTTTTAATGCAAC
TGCTTGCAATTTTGGTGCCCTTGGAGGTGTGTGCGTGCGTGTGTATGTGAGTGTGATATTACTGTGAGTTTCAACAGTAA
TGAGAACTGGTGTCCTGCGTTTGGGAGCTCTCTGTAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis