Browse Element(s) Details


OsAffx.14116.1.S1_at

Description tigr:9632.m03236
TID=OsAffx.14116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3373011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14116.1.S1_at--248--971Chr04:20231889..20231913 (25 bp)
AGGACCAGCGTGGTGATGATGAGCT
LOC_Os04g33730
OsAffx.14116.1.S1_at--86--8871Chr04:20231873..20231897 (25 bp)
TGATGAGCTCAAGGGAGAACGCCAA
LOC_Os04g33730
OsAffx.14116.1.S1_at--476--4831Chr04:20231867..20231891 (25 bp)
GCTCAAGGGAGAACGCCAAATCCAA
LOC_Os04g33730
OsAffx.14116.1.S1_at--124--7651Chr04:20231861..20231885 (25 bp)
GGGAGAACGCCAAATCCAATAGGAG
LOC_Os04g33730
OsAffx.14116.1.S1_at--768--5431Chr04:20231857..20231881 (25 bp)
GAACGCCAAATCCAATAGGAGGAAG
LOC_Os04g33730
OsAffx.14116.1.S1_at--1044--911Chr04:20231475..20231855 (25 bp)
AGGCTATATTGTTTGTTCTTTCACG
LOC_Os04g33730
OsAffx.14116.1.S1_at--1032--4871Chr04:20231473..20231853 (25 bp)
GCTATATTGTTTGTTCTTTCACGTA
LOC_Os04g33730
OsAffx.14116.1.S1_at--988--211Chr04:20231470..20231518 (25 bp)
ATATTGTTTGTTCTTTCACGTATAA
LOC_Os04g33730
OsAffx.14116.1.S1_at--67--10811Chr04:20231467..20231489 (23 bp)
TTGTTTGTTCTTTCACGTATAACTG
LOC_Os04g33730
OsAffx.14116.1.S1_at--808--6831Chr04:20231465..20231489 (25 bp)
GTTTGTTCTTTCACGTATAACTGAA
LOC_Os04g33730
OsAffx.14116.1.S1_at--142--10171Chr04:20231450..20231474 (25 bp)
TATAACTGAAACATTCAAGCGCCTG
LOC_Os04g33730
Target Sequence 
AGGACCAGCGTGGTGATGATGAGCTCAAGGGAGAACGCCAAATCCAATAGGAGGAAGAAGGCTATATTGTTTGTTCTTTC
ACGTATAACTGAAACATTCAAGCGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis