Browse Element(s) Details


Os.7509.1.S1_at

Description gb:AK120745.1
DB_XREF= gi:37990368
TID=Os.7509.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I05, full insert sequence.
FL= gb:AK120745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3371011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7509.1.S1_at--828--4071Chr04:20224358..20224382 (25 bp)
CGAGAGCTTCGATCCGGACGACGAC
LOC_Os04g33710
Os.7509.1.S1_at--125--3391Chr04:20224220..20224244 (25 bp)
CAGCGAAGGCGTAGGCCACGACGAC
LOC_Os04g33710
Os.7509.1.S1_at--622--5791Chr04:20224195..20224219 (25 bp)
GACGACAACCAGCACGCCGTGATGG
LOC_Os04g33710
Os.7509.1.S1_at--891--8111Chr04:20224007..20224031 (25 bp)
GGACGGCAGGTTCAAGCTGCTCATC
LOC_Os04g33710
Os.7509.1.S1_at--878--3911Chr04:20223911..20223935 (25 bp)
CGGCGCCCTCGAGTCTTGATCAGTA
LOC_Os04g33710
Os.7509.1.S1_at--443--1191Chr04:20223890..20223914 (25 bp)
AGTAGATCAGACAGAATTTTCCTTT
LOC_Os04g33710
Os.7509.1.S1_at--1156--3411Chr04:20223883..20223907 (25 bp)
CAGACAGAATTTTCCTTTTCTTTGG
LOC_Os04g33710
Os.7509.1.S1_at--647--1491Chr04:20223851..20223875 (25 bp)
AGCACCGTAAATTCTTCCTCTCCTT
LOC_Os04g33710
Os.7509.1.S1_at--352--9491Chr04:20223833..20223857 (25 bp)
TCTCCTTCCTGCGATAATGTGCATG
LOC_Os04g33710
Os.7509.1.S1_at--417--2971Chr04:20223818..20223842 (25 bp)
AATGTGCATGATCTTGCCGTTAATC
LOC_Os04g33710
Os.7509.1.S1_at--571--6431Chr04:20223809..20223833 (25 bp)
GATCTTGCCGTTAATCAATACATGC
LOC_Os04g33710
Target Sequence 
CGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCG
CGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGAC
GACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGAT
CGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGC
CGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGT
GGCGGCGCCGGCGCGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGAC
AGAATTTTCCTTTTCTTTGGTCTTTANAGCACCGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATCTTGCCGT
TAATCAATACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis