Browse Element(s) Details


Os.55574.1.S1_at

Description gb:AK108347.1
DB_XREF= gi:32993556
TID=Os.55574.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B08, full insert sequence.
FL= gb:AK108347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55574.1.S1_at--1067--3891Chr04:20205346..20205370 (25 bp)
CTGGGAGAGATGAAGCGCCTTGCTT
LOC_Os04g33670
Os.55574.1.S1_at--655--9451Chr04:20205418..20205442 (25 bp)
TCGGCGGCCTGAATCTGGTATATCG
LOC_Os04g33670
Os.55574.1.S1_at--427--7851Chr04:20205434..20205458 (25 bp)
GGTATATCGACGGATCACGGTCCCC
LOC_Os04g33670
Os.55574.1.S1_at--248--2451Chr04:20205465..20205489 (25 bp)
AACAACCATCCGTTCTTAGTACTTG
LOC_Os04g33670
Os.55574.1.S1_at--650--10051Chr04:20205481..20205505 (25 bp)
TAGTACTTGGAACAGCATCTCCCGT
LOC_Os04g33670
Os.55574.1.S1_at--856--451Chr04:20205497..20205521 (25 bp)
ATCTCCCGTGCTAATATCCAGTTGT
LOC_Os04g33670
Os.55574.1.S1_at--653--9571Chr04:20205549..20205573 (25 bp)
TCTTCTGCTTGTGCATGTGTGACAC
LOC_Os04g33670
Os.55574.1.S1_at--372--7471Chr04:20205565..20205589 (25 bp)
GTGTGACACTTTTCTTTATTGAGCA
LOC_Os04g33670
Os.55574.1.S1_at--240--1491Chr04:20205586..20205610 (25 bp)
AGCAAGCTGCTCCTTGTACCTTGTG
LOC_Os04g33670
Os.55574.1.S1_at--1066--6971Chr04:20205601..20205625 (25 bp)
GTACCTTGTGTTGTCGTCGATGTTA
LOC_Os04g33670
Os.55574.1.S1_at--750--2011Chr04:20205639..20205663 (25 bp)
ACTCACTGGACTTTCTACACTGTAG
LOC_Os04g33670
Target Sequence 
CTGGGAGAGATGAAGCGCCTTGCTTCACGGCGGTGGCCGGAGACCATGGCAGTGGCTGGGCAGGGACCAGTCTCGGCGGC
CTGAATCTGGTATATCGACGGATCACGGTCCCCGAGGCAAACAACCATCCGTTCTTAGTACTTGGAACAGCATCTCCCGT
GCTAATATCCAGTTGTTAACTCTGAAAAAAGTCATCTTTATCTTCTTCTGCTTGTGCATGTGTGACACTTTTCTTTATTG
AGCAAGCTGCTCCTTGTACCTTGTGTTGTCGTCGATGTTAGACTAGATTAATCACTCACTGGACTTTCTACACTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis