Browse Element(s) Details


Os.47985.1.S1_at

Description gb:AK060508.1
DB_XREF= gi:32970526
TID=Os.47985.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B12, full insert sequence.
FL= gb:AK060508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3368011/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47985.1.S1_at--967--4031Chr04:20207312..20207336 (25 bp)
CGATCGAGGCCCACGACGTGAAGTT
LOC_Os04g33680
Os.47985.1.S1_at--81--7451Chr04:20207350..20207374 (25 bp)
GTGTCCATGGACTCGGGCTACCGCG
LOC_Os04g33680
Os.47985.1.S1_at--789--7891Chr04:20207552..20207576 (25 bp)
GGTTCGTCATGTGCCGGGACTGCAA
LOC_Os04g33680
Os.47985.1.S1_at--449--471Chr04:20207665..20207689 (25 bp)
ATCTGCTCATGATGGATCCGGCGAT
LOC_Os04g33680
Os.47985.1.S1_at--617--4731Chr04:20207695..20207719 (25 bp)
GCTGTGAATCGTGTGTGATGTCCAA
LOC_Os04g33680
Os.47985.1.S1_at--447--6631Chr04:20207721..20207745 (25 bp)
GTTGTGGAGCAATTCGTGTCGTGTT
LOC_Os04g33680
Os.47985.1.S1_at--69--8831Chr04:20207776..20207800 (25 bp)
TGTTGGATTCTGGTTTGTGCTGCTT
LOC_Os04g33680
Os.47985.1.S1_at--136--8691Chr04:20207803..20207827 (25 bp)
TGTGCTCGGCAACGGCTAACAATTG
LOC_Os04g33680
Os.47985.1.S1_at--98--4851Chr04:20207817..20207841 (25 bp)
GCTAACAATTGTAATCTGTACCGAT
LOC_Os04g33680
Os.47985.1.S1_at--1075--6551Chr04:20207839..20207863 (25 bp)
GATTACTATTCTTTCTTTACCACTT
LOC_Os04g33680
Os.47985.1.S1_at--832--7391Chr04:20207865..20207889 (25 bp)
GTGATAATTTAATCGCTTTTCATTC
LOC_Os04g33680
Target Sequence 
CGATCGAGGCCCACGACGTGAAGTTGATCGAGCGGGACGTGTCCATGGACTCGGGCTACCGCGAGGAGCTGCGGCTGCTG
CTGGGCGGGCGGGAGGTGCGCGTGCCGGCGGTGTTCGTCCGGGGCCGGCACGTCGGCGGCGCGGCGGAGGTGACCAAGCT
GGAGGAGGAGGGCAAGCTGAAGGCGCTGCTGCAGGGCCTCCCGCGCGCGCGCGTCTGGTGCGCCGGCTGCGCCGGCGTGC
GGTTCGTCATGTGCCGGGACTGCAACGGCAGCCGCAAGGTGCGCGTGGACGGCGAGCGGAAGGAGACGGTCCAGTGCGGC
GAGTGCAACGAGAACGGCCNCGTCCGCTGCCCCATCTGCTCATGATGGATCCGGCGATGGATAGCTGTGAATCGTGTGTG
ATGTCCAAAGTTGTGGAGCAATTCGTGTCGTGTTGGGTNGATTCGCGTGTCTACCCCCGGCTGATGTTGGATTCTGGTTT
GTGCTGCTTGTTGTGCTCGGCAACGGCTAACAATTGTAATCTGTACCGATTACTATTCTTTCTTTACCACTTTGTGATAA
TTTAATCGCTTTTCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis