Browse Element(s) Details


Os.53585.1.S1_at

Description gb:AK073418.1
DB_XREF= gi:32983441
TID=Os.53585.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044C16, full insert sequence.
FL= gb:AK073418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3369011/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016192biological_processvesicle-mediated transport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53585.1.S1_at--216--3351Chr04:20217349..20217804 (25 bp)
CACGTGACTGTCTGTTGAGATCCAA
LOC_Os04g33690
Os.53585.1.S1_at--290--2711Chr04:20217842..20217866 (25 bp)
AAGCTTGTCTTTATCCATGGTGCAC
LOC_Os04g33690
Os.53585.1.S1_at--1001--811Chr04:20217918..20217942 (25 bp)
ATGGTTCTTTGGTAGCTAGCGCCAC
LOC_Os04g33690
Os.53585.1.S1_at--230--9991Chr04:20217934..20217958 (25 bp)
TAGCGCCACAGGTTTTAGATCGTTC
LOC_Os04g33690
Os.53585.1.S1_at--1115--1271Chr04:20217950..20217974 (25 bp)
AGATCGTTCCTTGAGGGCATCCGAA
LOC_Os04g33690
Os.53585.1.S1_at--363--6091Chr04:20217986..20218010 (25 bp)
GAGTACAGCAGATAGGCGCCCGTTT
LOC_Os04g33690
Os.53585.1.S1_at--705--6671Chr04:20218016..20218040 (25 bp)
GTTGCTTGAGCTGCCCAGTATTCAA
LOC_Os04g33690
Os.53585.1.S1_at--580--10751Chr04:20218085..20218109 (25 bp)
TTGAAGCCATGTTGTTCCTCATCTG
LOC_Os04g33690
Os.53585.1.S1_at--679--9611Chr04:20218103..20218127 (25 bp)
TCATCTGCTCTGTATCCATGGAGGT
LOC_Os04g33690
Os.53585.1.S1_at--159--1051Chr04:20218124..20218148 (25 bp)
AGGTGATCTACCAGTTCTCGCGGGA
LOC_Os04g33690
Os.53585.1.S1_at--884--4491Chr04:20218311..20218335 (25 bp)
GCCGTGTACTGATGTGTTCCTCTTA
LOC_Os04g33690
Target Sequence 
CACGTGACTGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCCCAAGCTTGTCTTTATCCAT
GGTGCACACGATGATACTACAGCATTCGAGAGATACCTGATTGAGGATCAAAGTGTCGATGGTTCTTTGGTAGCTAGCGC
CACAGGTTTTAGATCGTTCCTTGAGGGCATCCGAAGCAGGATAGCTGAGTACAGCAGATAGGCGCCCGTTTCAGCCGTTG
CTTGAGCTGCCCAGTATTCAAGGATTGATTTTTCTTGCTATCATGGATCAGCTGCTCCCTTTGCCTTGAAGCCATGTTGT
TCCTCATCTGCTCTGTATCCATGGAGGTGATCTACCAGTTCTCGCGGGACTGCTAGGGGAACCGATTTTTAAATGCATTT
GTAAGTTCAGACTCTGCAATGTTTTACAATATGAACATCCACACCGGCTGACCGGCTTTGCATGGTGGGTTGGACTGTAT
ACTAGAGAGCATATGCATATTTGATACATGTTTGTTTAGGCGGCGATTTTGGCCGTGTACTGATGTGTTCCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis