Browse Element(s) Details


OsAffx.26311.1.S1_at

Description tigr:9632.m03233
TID=OsAffx.26311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter transmembrane region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3370011/11ABC transporter transmembrane region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26311.1.S1_at--168--3011Chr04:20219298..20219321 (24 bp)
AATGCTGCTCTCTGGAACAATTGCT
LOC_Os04g33700
OsAffx.26311.1.S1_at--50--5831Chr04:20219255..20219279 (25 bp)
GACCCCATGGGAGCTATTGATATGA
LOC_Os04g33700
OsAffx.26311.1.S1_at--868--2351Chr04:20219221..20219245 (25 bp)
AAAGCGCTGCTAAGATTGCCAATGC
LOC_Os04g33700
OsAffx.26311.1.S1_at--219--2911Chr04:20219143..20219167 (25 bp)
AAGGTTCTAGCCTTAGTGGTGGGCA
LOC_Os04g33700
OsAffx.26311.1.S1_at--970--2871Chr04:20218967..20218991 (25 bp)
AAGGGCGATCTATCAGAACTCCTCC
LOC_Os04g33700
OsAffx.26311.1.S1_at--932--5451Chr04:20218952..20218976 (25 bp)
GAACTCCTCCGTACTGATATTGGAT
LOC_Os04g33700
OsAffx.26311.1.S1_at--611--8511Chr04:20218769..20218887 (25 bp)
TGGCAAACCACACTGTTCTTGTCAT
LOC_Os04g33700
OsAffx.26311.1.S1_at--724--10791Chr04:20218751..20218775 (25 bp)
TTGTCATTGCTCATCGGCTGGAAAT
LOC_Os04g33700
OsAffx.26311.1.S1_at--645--3291Chr04:20218670..20218694 (25 bp)
CAAAGTCATCTTTCTTGTCTCGAGA
LOC_Os04g33700
OsAffx.26311.1.S1_at--299--3611Chr04:20218657..20218681 (25 bp)
CTTGTCTCGAGATAGCCAGTTCAGC
LOC_Os04g33700
OsAffx.26311.1.S1_at--28--6151Chr04:20218602..20218626 (25 bp)
GAGGTTTAATGCAAAGGGCTTCTTT
LOC_Os04g33700
Target Sequence 
AATGCTGCTCTCTGGAACAATTGCTGAAAATATTGCTTATGGAGACCCCATGGGAGCTATTGATATGAGCAAGGTTGAAA
GCGCTGCTAAGATTGCCAATGCTGAGGAGTTCATTAAGATGTTGCCAGGAGGATATAATTCATATGTAGGGCAAAAAGGT
TCTAGCCTTAGTGGTGGGCAGAAACAAAGATTATCTATTGCAAGGGCGATCTATCAGAACTCCTCCGTACTGATATTGGA
TGAAGCAACATCAGCTTTGGATAGCAGGTCTGAGATACTAGTGAAAGAAGCATTGACGAATCTAATGGCAAACCACACTG
TTCTTGTCATTGCTCATCGGCTGGAAATGATCCTAATGGCTGATAGAATTGTCTTGTTGGAAGGTGGTAAATTGCGGGAG
ATCACAAAGTCATCTTTCTTGTCTCGAGATAGCCAGTTCAGCTCACCCCAAGGCAGCAGTCCGAAACTGGGTGAGGTTTA
ATGCAAAGGGCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis